barSeed - Barley Seed Development Database

Probe CUST_3059_PI390587928

Source Contig U35_11630

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3059_PI390587928	Hv_44K_v2	TAATCTTTTTAAGAGAACCATGCCATGGCTTGGTGAGGAGATATGCAAGAAAGATATGAA	611	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374613	3740	2e-24	1315 - 1374	100	60 / 60	plus	ABC14766
MLOC	MLOC_14584.1	3673	2e-24	2420 - 2479	100	60 / 60	minus	ABC14766
MLOC	MLOC_14584.2	3664	2e-24	2420 - 2479	100	60 / 60	minus	ABC14766
JLOC1	JLOC1_9957.2	3812	8e-25	1246 - 1305	100	60 / 60	plus
JLOC1	JLOC1_9957.1	3666	8e-25	1184 - 1243	100	60 / 60	plus
Harvest21	ABC24588	674	3e-25	612 - 671	100	60 / 60	plus
Harvest35	U35_11630	674	3e-25	612 - 671	100	60 / 60	plus

Contig Sequence (674 bp)

>U35_11630 674 Hv_44K_v2
GCTAAAAGGCATCTGCTGACTACTGGCTGGAGCTTATTTATCAGTGGAAAGAGACTTATT
GCTGGTGATTCAGTCTTATTTATTAGGGATGCAAAACAACAACTCCTCTTGGGGATCAGG
CGAGCAAATAGGCAACCTACTAACCTCTCATCATCTGTCTTGTCTAGTGATAGCATGCAT
ATCGGAGTTCTTGCTGCTGCAGCTCATGCAGCAGCAAATAACAGCCAATTCACAATATTC
TATAACCCAAGGGCCAGTCCTTCAGAATTTGTGATTCCTTTTGCCAAGTATCAGAAAGCA
GTCTATGGCAACCAATTATCTCTTGGCATGCGGTTTAGAATGATGTTTGAGACCGAAGAA
TCTGGAACAAGAAGGTACATGGGCACAATAACTGGCATAAGTGATCTGGATCCTGTAAGG
TGGAAAAACTCTCAGTGGCGCAATATTCAGGTTGCATGGGATGAAGCAGCACCAAGTGAA
AGACGCACCAGGGTTTCCCTTTGGGACATTGAGCCTGTCATCGCTCCATTCTTCATCTAC
CCCACACCATTATTCACTGCAAAGCGTGCGAGACAACCTGGGATGATAGATGATGATACC
TCTGGAATGGATAATCTTTTTAAGAGAACCATGCCATGGCTTGGTGAGGAGATATGCAAG
AAAGATATGAATAC

Homology of Contig U35_11630 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g40900.2	1056	3e-122	protein\|auxin response factor, putative, expressed
Brachypodium v1_2	Bradi3g40437.1	1042	9e-130
Arabidopsis v10	AT1G19220.1	1086	1e-92	\| Symbols: ARF19, IAA22, ARF11 \| auxin response factor 19 \| chr1:6628395-6632779 REVERSE LENGTH=1086