barSeed - Barley Seed Development Database

Probe CUST_30594_PI390587928

Source Contig U35_17780

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30594_PI390587928	Hv_44K_v2	TGCTGTATCAATACAATTCTTATGGAGGTTAATAAGCCGTCGCCCCCTTCTAGCTTCAAA	907	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.256	1.301	0.972	1.068	0.578	0.529
Raw	1872.200	2964.433	1989.063	3365.770	648.289	642.813

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_23568.1	1071	4e-23	945 - 1004	98	59 / 60	plus
Harvest21	ABC09317	972	3e-25	899 - 958	100	60 / 60	plus	ABC09317
Harvest35	U35_17780	981	3e-25	908 - 967	100	60 / 60	plus

Contig Sequence (981 bp)

>U35_17780 981 Hv_44K_v2
CGGGGACTCGTCGTGCGGTGCGGTGCGTTGTCCCCCCCGGTCCCGTTTCCTTCGTCGGCC
TGCGCTGCGCAACCGCCGGAGATCTCGTCCACCGTCCCGCTCCTCCGCTCCCCCGGCGAA
TCCGCTCGGCTTCCCCCCAATGGAGACCTGCCCTTCGGTGAAGAACATTCTGCTGCTGGA
CTCCGAGGGGAAGCGCGTCGCCGTCAAGTACTACACGGATGATTGGCCGGTGCTCTCGGC
GAAGCTGGCCTTCGAGAAGTCGGTCTTTGTCAAGACCCAGAAAGCAAGTTCTGGCGCGGA
GGCTGAGATTGTAATGTTTGATGGTCACATTGTTGTGTATAAGTTCGTCCAAGACCTCCA
TTTTTTTGTTTCTGGAGGAGATGAGGAGAATGAACTTATTTTAGCATCAGTTCTTCAGGG
ATTCGCTGATGCCATTGACATTATTCTTAGAAATAATGTTGACAAAAGAACAGCTCTTGA
AAATCTGGATCTAATCCTATTATGCCTTGATGAAATTGTTGATGGAGGGATTGTCCTAGA
AACAGAAGGAAGTGTGATAGCTGAAAAGGTACTAGCTCATGGAGCAGAGGGTGCCACGTC
AATCGCCGAGCAGACTATAGTTCAGGCCCTAACAACAGCAAGAGAGCACTTTGCCAAATC
TCTGCTAATGTGACGTGTTATGATCTCGGAGATGAAGATGGCATTAATCAATGTGTTCAT
TTCATAAGCAAAGGAAAAGGAAGGAGGGGAAATGTCCGGATCTGTGGGTGTAAAATTACG
CGTTTTCGTTGACGTTATATGATTGTTCAGTTTTACAAGTCTTCAAAATTTGTGTAGACA
AGGTTGTGAAATGTGATTGTCTCAATTTTACTTGGTTCAGTTGACTTTCGTGTTGTTTTA
CTATACTTGCTGTATCAATACAATTCTTATGGAGGTTAATAAGCCGTCGCCCCCTTCTAG
CTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17780 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g38610.1	178	1e-97	protein\|clathrin adaptor complex small chain domain containing protein, expressed
Brachypodium v1_2	Bradi2g23150.1	178	8e-100
Arabidopsis v10	AT3G09800.1	179	1e-64	SNARE-like superfamily protein \| chr3:3006731-3007916 REVERSE LENGTH=179