barSeed - Barley Seed Development Database

Probe CUST_30592_PI390587928

Source Contig U35_17782

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30592_PI390587928	Hv_44K_v2	CGCGGTTCCGTTATTACATCTTAAATGTGTTGTATGTGTGGTGTATTTTGTGGTTGTTGT	913	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250788.1	1094	2e-24	948 - 1007	100	60 / 60	plus	ABC07939 ABC07940
JLOC1	JLOC1_38878.1	1028	8e-25	584 - 643	100	60 / 60	plus
Harvest21	ABC07940	1027	3e-25	914 - 973	100	60 / 60	plus	ABC07940
Harvest21	ABC43090	616	1e-23	106 - 165	98	59 / 60	minus
Harvest35	U35_17782	1069	3e-25	914 - 973	100	60 / 60	plus

Contig Sequence (1069 bp)

>U35_17782 1069 Hv_44K_v2
CCCACCCGACCCGACTCGACCGCACCCCCACCACCAGCCTCTCCTCCCCCGCCGCCGCCA
CCACCGGCGACCACCGGAGCCCGAGAAGAAGAAAAGCGCGAGCGCCCCGCGGACCGAAGC
GGAGGAGATGGTGGGCGCCCCGACGTCGTCGGTGGTGAACGTGTACCCGCTCGCCAACTA
CACGTTCGGCACCAAGGAGCCCAAGATGGAGAAGGACACCTCCGTCGCCGACCGCCTCGC
CCGCATGAAGGTCAACTACATGAAAGAAGGAATGCGGACAAGTGTTGAAGCTATCCTACT
GGTGCAAGAGCACAATCACCCCCACATACTGTTATTGCAAATTGGAAACACATTTTGCAA
ACTTCCTGGTGGACGTTTGAAGCCTGGAGAAAATGAAATTGAGGGCCTGAAAAGAAAGCT
GTGCAGCAAACTTGCAGTGAACTCACCTTCCTTTCCACCTAACTGGCAGGTTGGTGAGTG
TGTTGCTGTTTGGTGGAGGCCAAACTTTGAGACCGTGATGTATCCTTATTGCCCTCCACA
TATAACCAAGCCCAAGGAATGCAAGAAGCTTTTCATTGTTCATCTAACTGAAAGAGAGTA
TTTCGCTGTTCCAAGGAACTTGAAGCTACTTGCTGTTCCACTGTTTGAACTCTATGACAA
TGTTCAGCGGTATGGACCTGTAATTTCCACCATCCCACAGCAGCTGTCTAGGTTCCAGTT
CAACATGGTGAGCTCGTAAGGGTGATGAGATAGTGTCCCCAAGGTCTCTTTCGGCAACCC
ACTCCGAGCGTCTCTTCGACACCAAACTGGCTAATTAGTAGCATGACATGTTTTCTCAGT
AACCATGTTTCCATGAATTATGCAGCACTATTAGTCTATAAACTAGACATGTACCATTGT
TGGTCGTTAATTTCGCGGTTCCGTTATTACATCTTAAATGTGTTGTATGTGTGGTGTATT
TTGTGGTTGTTGTTCTTTGTTCTAATTTATTTGTGTATATGTACCAATGTATGTATTTAT
GATTTACATGATGATCTGCTGTAGTAACTCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_17782 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g58640.1	203	6e-143	protein\|cleavage and polyadenylation specificity factor subunit 5, putative, expressed
Brachypodium v1_2	Bradi5g26806.2	204	2e-145
Arabidopsis v10	AT4G25550.1	200	1e-126	Cleavage/polyadenylation specificity factor, 25kDa subunit \| chr4:13048519-13050873 FORWARD LENGTH=200