barSeed - Barley Seed Development Database

Probe CUST_30582_PI390587928

Source Contig U35_29763

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30582_PI390587928	Hv_44K_v2	GTTAATTTCCTGAAACCGTGCTAACTGAAACTAATCAGTCTGTGTGCTAGTAACAAATTG	496	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21913.1	1155	2e-24	726 - 785	100	60 / 60	plus	ABC07565
Harvest21	ABC29214	556	3e-25	497 - 556	100	60 / 60	plus
Harvest35	U35_29763	556	3e-25	497 - 556	100	60 / 60	plus

Contig Sequence (556 bp)

>U35_29763 556 Hv_44K_v2
CGGACGCCATCGACCATTGGGCATGCCGCTGACCTCCAGCGCCGCGCACTCCGCCTCCAC
CTCCACCTCCACCTCCACCAGCGGTGGAAACGCTTTGGCTCAGCTGGTACTCCCCATAAT
AAAAGCAACCGGGCGTGTGCCGAGGAGCCTCTACTGATTTGGCCACGCGCGGCTCCAATC
TGCTGGTACATGGTGCTGCGAAAAGTCTACGTAAATCCCGATGGCTGGCATGGAACAGAG
TTTTCTTGCCTCCGCCCCCGATCTTTCTCACCATATGGTACCCAACTCTATAGGTGGCCA
GTACAATGTCATTGTCCGCCTTGAGGGACACGTACGGTTGCGTCGAAGACCATCACCAGA
AGGGACGGGAATTAATGGGATGATAGCTTTCTGCATCACGAAATCATCTATGTTTGCCAG
TGATAAATGCCGCGCGAGGATCAACCAGTGACATTCATGTTGATTATTTGCTGCTTTTAT
GCGTTACTGGCTATCAGTTAATTTCCTGAAACCGTGCTAACTGAAACTAATCAGTCTGTG
TGCTAGTAACAAATTG

Homology of Contig U35_29763 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None