barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_30581_PI390587928Hv_44K_v2AAGATTGTGATCAAGACCTGTGGGACTACCATGCTTCTGCTCACCATTCCAAGGATTCTT223GeneList: None
MasterList: None



Probe Values

This probe has no recorded values for this experiment





Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_69140.121032e-24797 - 85610060 / 60plus ABC00275 ABC00309 ABC00398 ABC00501 ABC00925 ABC01000 ABC34629 ABC37572 ABC37604 ABC37614 ABC47640
JLOC1JLOC1_45803.218558e-25787 - 84610060 / 60plus
JLOC1JLOC1_45803.121278e-25799 - 85810060 / 60plus
Harvest21ABC438682093e-2595 - 15410060 / 60plus
Harvest21ABC292165423e-25224 - 28310060 / 60plus
Harvest21ABC0085120083e-251166 - 122510060 / 60minus
Harvest21ABC0009220143e-25781 - 84010060 / 60plus
Harvest21ABC384782221e-2366 - 12210057 / 57plus
Harvest35U35_297645423e-25224 - 28310060 / 60plus
Harvest35U35_1382920283e-25793 - 85210060 / 60plus



Contig Sequence (542 bp)

>U35_29764 542 Hv_44K_v2
CTCGTCGGGAGGGCTCGAGATCTGTGTCGGGAGAGGGGGGAATTCTTGAGATCGGAACCG
GAACAAGCGGGCGCGCTCGGGAAGGGGTTACCATACCAATTTTTCCCAGGAACCCTTAGT
GAATGTTCTTGATCTTGCACGGTGCACCATTGTGTCCGAGCTCTCCAACAAGGACTTTGA
CTCGTATGTGCTATCTGAGTCGAGCCTGTTTATCTACTCTCAGAAGATTGTGATCAAGAC
CTGTGGGACTACCATGCTTCTGCTCACCATTCCAAGGATTCTTGAGCTAGCTGAGGAGCT
GTGCATGCCGCTTGCTGCCGTGAAGTACTCCCGTGGGATGTTCATCTTCCCCGGCGCACA
GCCTGCTCCCCACAGGAGCTTCTCTGAGGAGGTTGATGTCCTGAACAGCTACTTCGGCCA
CCTGAAGTCTGGTGGCAATGCCTATGTGATTGGCGACCCAGCGAAGCCTCGCCAGAAGTG
GCACATCTACTATGCCACTGAGCAACCCGAGCAGCCCATGGTCACCCTGGAGATGTGCAT
GA



Homology of Contig U35_29764 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os04g42090.23998e-86protein|CPuORF7 - conserved peptide uORF-containing transcript, expressed
Brachypodium v1_2Bradi5g14640.13971e-91
Arabidopsis v10None