barSeed - Barley Seed Development Database

Probe CUST_30579_PI390587928

Source Contig U35_29766

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30579_PI390587928	Hv_44K_v2	ATCTAATGCTGAAAACAGTGGACTCAAAATGTACAGAGACACTGCTGAGGCCGTCATTTG	495	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.859	1.506	1.128	0.986	1.274	0.806
Raw	5.782	17.489	11.931	15.520	5.845	3.509

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362095	1844	2e-24	1079 - 1138	100	60 / 60	plus	None
MLOC	MLOC_44777.2	1616	2e-24	1323 - 1382	100	60 / 60	plus	None
MLOC	MLOC_44777.1	1781	2e-24	792 - 851	100	60 / 60	plus	None
JLOC1	JLOC1_29041.1	1965	8e-25	792 - 851	100	60 / 60	plus
Harvest21	ABC29219	559	3e-25	496 - 555	100	60 / 60	plus
Harvest35	U35_29766	559	3e-25	496 - 555	100	60 / 60	plus

Contig Sequence (559 bp)

>U35_29766 559 Hv_44K_v2
CGTGTTCTACATTCAGGTTGGTGATCCTGATCTAGATCACGACTGCTGGCAAAGGCCAGA
AACAATGACTGAGAAAAGGCCGCTCACACAGATTAACCCAAAGAACCCTGGGTCAGATAT
CGCTGCTGAGGCAGCAGCAGCCCTGGCGGCAGCATCGATGGTTTTCAAATCCAGTGACAC
TACATATTCTGATTCACTTCTTCAACATGCCCAGAAGTTATTTACTTTTGCTGATACTTA
TAAAGGCATCGCCAGCGACACCTATCCAAAGCTTCAGAAGTACTATAATTCTACTGGTTA
TGTCGATGAGCTCCTCTGGGCAGCAAGTTGGCTCTATCATGCCACAGGAGATCAGACATA
TCTCAGTTATGTGACTGTACAGAACGGGAAAGATTATGCTGATTGGGGAAGGCCCACATG
GTTCAGCTGGGATGACAAGCTCCCAGGGACACAGATCCTTTTGTCCAGAGTTAATTTCTT
TGGATCCAAAGAGATATCTAATGCTGAAAACAGTGGACTCAAAATGTACAGAGACACTGC
TGAGGCCGTCATTTGTGGG

Homology of Contig U35_29766 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g36350.2	396	9e-114	protein\|endoglucanase, putative, expressed
Brachypodium v1_2	Bradi4g36240.1	419	4e-120
Arabidopsis v10	AT1G75680.1	525	2e-70	\| Symbols: AtGH9B7, GH9B7 \| glycosyl hydrolase 9B7 \| chr1:28417215-28419231 REVERSE LENGTH=525