barSeed - Barley Seed Development Database

Probe CUST_30574_PI390587928

Source Contig U35_17791

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30574_PI390587928	Hv_44K_v2	AGACATGGACGTACCCCTCGCTTAAAAGGCAAGAGAAAATCATCAGGCCTATCTAAAAAA	1025	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.791	2.458	1.138	0.763	0.277	0.285
Raw	413.316	570.576	230.604	251.543	30.842	34.077

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC07570	1096	3e-25	1026 - 1085	100	60 / 60	plus	ABC07570
Harvest35	U35_17791	1096	3e-25	1026 - 1085	100	60 / 60	plus

Contig Sequence (1096 bp)

>U35_17791 1096 Hv_44K_v2
GGCCCGAAACAGCAAGGTCTAGCGCTCGCCTCTCTCCTCCTCGTCTTCGGCGGCGGCGAT
GCTCTCCGGCGACGTTCCCCCGAACCAGACCGTCTACTTCAAGAACCTCAACGAGAAGGT
CAAGAAAGAAGAGCTGAAGAGATCACTCTATGCATTGTGCTCTCAGTATGGAAGAATAGT
GGATGTTGTGGCCTTAAAAACTCATAAACTCAGGGGGCAAGCCTGGGTGGCATTCAGTGA
AATTACAGCGGCCACCAATGCTTTCCGGGGCCTACAAGACTTCGATTTTTACGGCAAAAA
AATGCGGGTACAATATGCAAAAACAAAGTCTGACTGTTTTGCCAAAGCAGATGGTTCTTA
TGCTCCTAAAGAGAAAAGGAAGAAGCAAGAGGAGAAAGCTGCTGAGAAAAAACGGCGAAC
TGAAGATGGACAACAACCCGGTGCTAATGCTCCTGTCGCCCCAAGCAATGGAACTGGTCA
TCAACCTTCTCGTTTTGCCAAGCCTCCGCAAGAGCCAGCTGCTCCGCCGAACAACATCCT
CTTCCTCCAGAACTTGCCGGACCAGACGACGAGCGTGATGCTCCAGATCCTGTTCCAGCA
ATACCCTGGTTTCCGGGAGGTGCGGATGATCGAAGCCAAGCCAGGCATTGCTTTTGTGGA
GTATGAGGACGAGAACCAGTCCATGGTTGCAATGGAAGCCCTCCAGGGTTTCAAGATCAG
CCCAGAGAACCCAATGGCTATATCATACGCCAAAAAGTGAACGATCCCCCGAACCGGCCC
AAAAGAAAATTCTGTAACTGTAAGATTTTCCACCCTAAGCTTTCAAGCTGCTGTGCTGGC
TTTCTAACCCTGTATTTCTTGGAAGTGACTTGCTTGTTGTTTAAGAAGTTAAAAGTATCT
GCTACTTTAAAATCAGGTTTGGCTCTACGCTTTCGTGTGAACCCTGGTATTGTCCTTGTC
AAGTCTGGTATCGTGGGCTGCATAATCTTTTCATGTTTCACATACAGTGGTAGGAGAAGT
TAACAAGACATGGACGTACCCCTCGCTTAAAAGGCAAGAGAAAATCATCAGGCCTATCTA
AAAAAAAAAAAAAAAA

Homology of Contig U35_17791 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g18720.1	233	9e-108	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi1g65000.1	234	9e-121
Arabidopsis v10	AT2G30260.1	232	3e-80	\| Symbols: U2B \| U2 small nuclear ribonucleoprotein B \| chr2:12905557-12907434 REVERSE LENGTH=232