barSeed - Barley Seed Development Database

Probe CUST_30572_PI390587928

Source Contig U35_17793

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30572_PI390587928	Hv_44K_v2	ATGTATTATCGTGTACTCTATGTTGCACCCTGATTTGATGGAGTGCCGGGCTTCATTATC	1239	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.397	2.531	1.210	0.788	0.182	0.142
Raw	151.454	258.525	106.259	115.643	7.983	6.978

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4186.1	1061	7e-23	475 - 534	98	59 / 60	minus	ABC08263
JLOC1	JLOC1_2569.1	815	4e-23	229 - 288	98	59 / 60	minus
Harvest21	ABC08263	719	3e-25	637 - 696	100	60 / 60	plus	ABC08263
Harvest35	U35_17793	1322	3e-25	1240 - 1299	100	60 / 60	plus

Contig Sequence (1322 bp)

>U35_17793 1322 Hv_44K_v2
CGCGTATTCCCACCGTTTCCCCCTCCCCCCTCCCACACCCATCCAATTCCCCCACTCCAT
CGCCGCTCCTTCCCGGCCCTTCCTCGGCTCCTCGCATTGCAGGGAGGAGGCTCAATCAAG
ATGCCGACCATCATCATCAAGGTGGACCTGGACTGCGCCCGCTGCCACCGCAAGATCGAG
AGGGTGCTCGACAGGATCAGAGAGAAGGGCGAGTTCGTCATCGACGACATCGAGTACGAT
GAGAAGAACAACAAGGTGATCGTGAAGGGGCCCTTCGACGCGGACAAGCTCTCCGACAAG
CTCTGCTGCAAGGCCTGCAAGATCATCAAGGAGATCGAGATCGTGGAGCCGCCGCCGCCC
CCGCCGCCGGAGCCGCCGAAGAAGGAGGAGCCCGCGCCCCCGGCGCCGGAGCCGGAGGTC
GTGGTGCCGCCGCCGCCAGCGGTCCTGGAGGTGCCCAAGGCCGAGCCCGAGCCGGAGCCG
CCCAAGAGTGAACCGGAGCCGCCCAAGGAGGAGCCGCCGCCCCCGCCCACGCCCAAGAAG
GAGGAGCCCACGCCGCCGCCGCCCAAGATCGTGGAGGTGCCGTACCCGTGGCCGTACCCC
TACCCGTACCCGGCGTGGCCGTCGGACTGCTGCTGCTGCCACGGCCACGGCGGCTGCCAC
TGCTGCTCCTGCAAGCAAGAGCCGGCCCCGGCGCCGGCGCCGGCACCCCCGCCGCCCCAG
TACAACATCTACCCGCAGTACCCGCCGTACCCGCCGTACCCGCAGCAGCCAGCGTACCCG
TGCGGCGGCTACAAGATCGTCTGCGAGGAGGACCCCTCCTACGCCTGCGCCATCATGTGA
TCGATCGATTGGTCAGTACGTGGCGCTACACCCCGCTCCCATCCCACCACCTCCGCCGTC
GCGTCCGCCATTAATCCGATATGATCTTCCCGTATAAGCACCGTACAGATACGCCGCGCG
CGCATGTATAGGCTCCCTTCGCGTACATATACACGCGCCCCATATACACCTACTCTCTAC
TCTGCTCTACTCCCACTGTTCATTTCCCCTGTGATTAGAGGCAGGAATAAAATACATACA
CCCAACTGCATTCATGTACTACGTACGTATATACTGTTACTACTGCCCTTAGAAACTAAG
GATGATCTGAGATCCATGATCAGGGTCTGTCGACTGTCACTCCTCCACTTTTATCTAATT
ATTAGTATGTGCTGCTGTGACATCTTGTCACTTTAAATTATGTATTATCGTGTACTCTAT
GTTGCACCCTGATTTGATGGAGTGCCGGGCTTCATTATCCTCCCCAAAAAAAAAAAAAAA
AA

Homology of Contig U35_17793 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None