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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_30571_PI390587928Hv_44K_v2ATATTTTGGATCTGATGAGAGTGACTCCTCGAGATGCTAACTACATTGGACTGCAGCACC2644GeneList: skyblue3
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.3951.0971.4600.8010.5350.447
Raw 582.442632.912828.479643.195166.549151.860



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36350745582e-242059 - 211810060 / 60plus ABC05801
MLOCMLOC_21728.425022e-249 - 6810060 / 60plus ABC05801
MLOCMLOC_21728.126332e-2485 - 14410060 / 60plus ABC05801
MLOCMLOC_21728.326012e-24127 - 18610060 / 60plus ABC05801
MLOCMLOC_21728.221702e-2479 - 13810060 / 60plus ABC05801
JLOC1JLOC1_15070.527958e-259 - 6810060 / 60plus
JLOC1JLOC1_15070.425558e-259 - 6810060 / 60plus
JLOC1JLOC1_15070.325498e-259 - 6810060 / 60plus
JLOC1JLOC1_15070.225808e-2510 - 6910060 / 60plus
JLOC1JLOC1_15070.125868e-2510 - 6910060 / 60plus
Harvest21ABC276125413e-25451 - 51010060 / 60plus
Harvest35U35_1779427353e-252645 - 270410060 / 60plus



Contig Sequence (2735 bp)

>U35_17794 2735 Hv_44K_v2
GGGCTGCAGGAATTCGGCAACGAGGGTTCCCGTCGCTCGTGATCGGACGGGACGGCGCCA
TCCGCGCGCAAGGAAGCTACGCCGAGGCCAAGGCAAAGTTCTTATCTCCTGACCAGTCCA
AGATTTCCGAGCTTGTGAATGCCCTTACAGAGAAAGAAATCGGGATTGTGGCCCATTTCT
ATATGGATCCTGAGGTGCAAGGCATACTAACTGCTGCAAAGAGGCAATGGCCCCACATTC
ACATATCTGACTCATTGGTTATGGCAGATAGTGCTGTTCAGATGGCTGAAGCAGGATGCA
AATATATCGCTGTGCTAGGTGTTGACTTCATGTCGGAAAATGTCCGTGCAATACTTGATC
AAGCAGGATTTATTCAGGTTGGTGTTTATAGAATGTCCAGCGAGCAAATTGGCTGTTCCT
TGGCAGATGCTGCTTCAAGTTCTGCTTATACACATTTTCTTAAGACGGCATCAAGATCTC
CTCCTTCTTTACATGTCATTTATATCAATACCTCGCTGGAAACAAAAGCTCGTACTCATG
AACTTGTTCCTACGATAACCTGTACCTCTTCCAATGTTGTTGCAACTATACTACAGGCAT
TTGCCGAAATACCAGATCTTAATGTCTGGTATGGTCCTGATTCCTATATGGGTGCAAACA
TAGCAGATCTATTTAAGAGAATGACTATCATGTCAGATGAAGAGATTACAGAGATACATC
CAGATCACAACAGGAAAACTATAAGTTCATTATTACGACATCTTCATTACTATCAGAATG
GTAACTGTATTGTGCATGATATGTTTGGCCATGAAGTTGTGGAGAAAATAAAGGAGGAAT
ACTGTGATGCATTTCTAACTGCACACTTTGAGGTCCCAGGAGAAATGTTCTCTTTGTCAA
TGGAAGCAAAGATGAGGGGAATGGGAGTTGTTGGATCCACTCAGAATATTTTAGATTTCA
TTAAAAAACATTTGAAGCAAGCTCTGGATCGGAATGTTGATGATCATCTTCAGTTTGTAT
TGGGAACAGAATCAGGAATGATCACCTCGATTGTTGCTGCTGTCCGGCAATTATTTGACT
CCTATGAATCTTCTGAAGAAGGTGCTAGCATTGAAGTAGAAATTGTGTTCCCTGTTTCGT
CAGACGCAATTTCTAAGACATCTATTGATGATACCCATCATTTCGGCTCTTCAGTAACGA
ATGATTTAGAACAGAATAGTATTGTGCCTGGTGTGTTTTCTGGTGAAGGGTGCTCTATCC
ATGGTGGCTGTGCATCATGCCCTTACATGAAGATGAATTCTCTCGAGTCGCTACTTAAAA
TCTGCCAGCAACTTCCTGGTGAAGACGGCAGTTTATCTGTTTATCAGGCTAGTCGATTGA
ATGCTAAGACTTCCCTTGGGAAATTGGTTGCCGAGGTTGGGTGTGAGCCAATTTTGCATA
TGAGGCATTTCCAGGCGACAAAGAGATTACCAGACAAGCTCGTTCACCAGGTTATCCATG
GTAACGGAGGGGAACCTGTATGATGGCCGCTCCTCAGAATCTTTCCTGTTAACTTTATTC
AGGTGTCTATGGGTGATACATTATGCTGCCCCACTTGAGTACTACCCCGTACCTTAGCAA
TGCAGGGTGCAGTATCCGGCTTTGCACCAAATGTTGTTATCCTGTTACTGATAATTACCG
GTGGAGTGACGTTCACAGAGTTTGCAATGGGTAGAGACCAACTGTTATTTGTCTCAGCCC
AAATGTTTCTTGCGAATGTTTGATATCAGATATATGAATGGGCGACATACGAGTATACAA
TAGCATTGCTCAACATTTTTTGTGTTTTCTAATGAGGAGGACTTAAATCACATGTGTTTA
TGATGTATTTGAAGCTAGCGGCCGCTATTGCAGTCATGCCGAGAGTTTCCTCATGCCAAT
CCTCAAGAAAGGATATTGCGAGGCAGAGCACTCTATAAAGTGACATGCGATTTTGTTGAT
GCTGCTGTAAAAGGAGCAGTCGGTGTCATCAATAGATGTATACCTCCAATCAATCCAACT
GATCCAGAGTGTTTTCATATGTATGTCCACAACAACATTTTCTTCAGTTTTGCTGTTGAC
TCTGACTATGAGCAAATCTCAAAGGACCAAAAGCCAGATTGCCAAAATGGTTCTAGCAGA
AGTACGCCAGTCCCCTCACCTGATTTGGGTGCCAAGGCAGTTTCTGGCGTAGCACCTGGT
TCAAAAACTGAAGAGCCTAACAGTGTTTTGGAAGGACCTACAGAGGCACAAATAGCAGAC
AGTGAGCAGGCGACCTATGCTTCTGCTAATAATGACTTGAAAGGAACGAAATCTTACCAA
GAAGCTGATATTTCTGGGCTTTACAATCTTGCCATGGCAATAATTGATTACAGAGGTCAC
AGGGTTGTAGCTCAGAGTATCATACCTGGTATTCTTCAAGGAGACAAGTCTGACTCCCTT
CTGTATGGTTCTGTTGATAATGGCAAGAAGATATCTTGGAACGAGTCATTCCATGCAAAG
GTAGTTGAGGCTGCAAAGCGACTCCATGTGAAGGAGCATGTGGTTTTGGATGGTTCTGGC
AATCCTGTAAAATTAGCTGCTACAGTTGAATGCAAGGGAATTGTTGGTAGCGATGACAGG
CATTATATTTTGGATCTGATGAGAGTGACTCCTCGAGATGCTAACTACATTGGACTGCAG
CACCGTTTCTGTGTGTTGAGACCTGAGCTTGTAGC



Homology of Contig U35_17794 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os12g19304.27120.0protein|Fe-S metabolism associated domain containing protein, expressed
Brachypodium v1_2Bradi4g39020.17140.0
Arabidopsis v10AT5G50210.17180.0| Symbols: QS, OLD5, SUFE3 | quinolinate synthase | chr5:20442803-20445706 FORWARD LENGTH=718