barSeed - Barley Seed Development Database

Probe CUST_30562_PI390587928

Source Contig U35_29773

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30562_PI390587928	Hv_44K_v2	AGATCGGCCCCCGTGTTGTTGATGCCTGATTCGTGGATCTTAAATGAAATGAGATTAAGG	325	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362715	2775	2e-24	1434 - 1493	100	60 / 60	minus	ABC04144 ABC04430 ABC04431 ABC15220 ABC31625
MLOC	AK365026	4615	2e-24	598 - 657	100	60 / 60	plus	ABC04430 ABC04431
MLOC	MLOC_15472.1	497	2e-24	435 - 494	100	60 / 60	plus	ABC04430 ABC04431
MLOC	MLOC_15471.1	869	7e-23	683 - 742	98	59 / 60	plus	ABC04430 ABC04431
MLOC	MLOC_15471.3	554	7e-23	490 - 549	98	59 / 60	plus	ABC04430 ABC04431
JLOC1	JLOC1_10616.1	819	4e-23	520 - 579	98	59 / 60	plus
Harvest21	ABC29227	386	3e-25	326 - 385	100	60 / 60	plus
Harvest21	ABC04431	513	3e-25	423 - 482	100	60 / 60	plus	ABC04431
Harvest21	ABC04430	637	3e-25	548 - 607	100	60 / 60	plus	ABC04430
Harvest35	U35_29773	386	3e-25	326 - 385	100	60 / 60	plus
Harvest35	U35_1306	519	3e-25	430 - 489	100	60 / 60	plus
Harvest35	U35_1305	669	3e-25	57 - 116	100	60 / 60	minus
Harvest35	U35_1304	637	3e-25	548 - 607	100	60 / 60	plus

Contig Sequence (386 bp)

>U35_29773 386 Hv_44K_v2
TACGACCTGCCCCCTCCCTCTCTCCGTCAATCTTTCTCCCGTCCCCCAAATCTCTCTACC
TCGGAGCGACGACGGGCTCACGCCGGAGCAGCGACGAGAGAGGGACGCCAAGGCGCTGCA
GGAGAAGACCGCCAAGAAGGCGGCGCAGGCAACGAAGGGGGCCGACGACGCCAAGAAGAA
CGCCGCCGGCAAGAAATAGTAGCACCCGGGTTCCGTCCCTGCGGCATGTTGGATCTGGTC
TGTCATGACGTCGAGATGTTCTGATGTAAAATTCTGTCCGATCTGGTCGCTCCCTGCTTG
TAACACAAACTCGTTCAGCGCCTCCAGATCGGCCCCCGTGTTGTTGATGCCTGATTCGTG
GATCTTAAATGAAATGAGATTAAGGC

Homology of Contig U35_29773 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None