barSeed - Barley Seed Development Database

Probe CUST_30561_PI390587928

Source Contig U35_29774

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30561_PI390587928	Hv_44K_v2	CTGATGAGAGATGTTCTTACTGAGGAAAATCTAGTAAAAGAACAAGCTGCAGGAAATGAG	488	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74648.2	2860	3e-22	1243 - 1301	98	59 / 60	minus	ABC12769
MLOC	MLOC_74648.1	3350	3e-22	1710 - 1768	98	59 / 60	minus	ABC12769 ABC40411
JLOC1	JLOC1_49765.1	3319	1e-22	1517 - 1575	98	59 / 60	plus
Harvest21	ABC29228	552	3e-25	489 - 548	100	60 / 60	plus
Harvest35	U35_29774	552	3e-25	489 - 548	100	60 / 60	plus

Contig Sequence (552 bp)

>U35_29774 552 Hv_44K_v2
CACATTTGTGGCAAAAGCAGCATCAGCTACTACTGTTGGATTTGCAATATTCATCATTGG
GTTCTTGACACAGCTTGTTACAACCTTTGGGTTCCCATATTCAAATACCTATGAGGCATA
CTACCGGACAATATGGTCCTTCTTCCCCCCTAATGTTTTTGCACAAGCCCTCAATATTCT
AGGTAAGGCAACAGCAACTCCAGAAGACAAGGGCATTAGCTGGAATCAGCGTACAACGTG
CCAATCATTTGAGACGGACTGCGTCATTACAGTAGATGACATCTACATATGGCTCATCTC
CACATTTTTCTTGTGGTTTATCCTGGCAATCTACTTCGACAACATAATTCCAAATGTCAA
TGGTGTTAGAAAGTCAGTGTTGTACTTTCTGACGCCTTCATACTGGACAGGGAAAGGAGG
CAAGATGCGAGAGGGAGGCCTTTGTAGCTGCTTTGGTTCGAGCCATTCAGCTGATGATGC
TAGCCCTACTGATGAGAGATGTTCTTACTGAGGAAAATCTAGTAAAAGAACAAGCTGCAG
GAAATGAGGTAG

Homology of Contig U35_29774 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g30740.1	969	9e-95	protein\|ABC transporter, ATP-binding protein, putative, expressed
Brachypodium v1_2	Bradi3g35400.2	914	3e-99
Arabidopsis v10	AT3G47730.1	983	2e-66	\| Symbols: ATATH1, ATH1, ABCA2 \| ATP-binding cassette A2 \| chr3:17594342-17598828 REVERSE LENGTH=983