- Probe CUST_30560_PI390587928
- Source Contig U35_29775
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30560_PI390587928 | Hv_44K_v2 | GTGGAGCATCATCACATGGATTCCAAGAACGCCCACCACCACCACCACAACCACAGCAAC | 196 | GeneList: lightyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.354 | 0.405 | 1.096 | 1.751 | 1.061 | 1.256 |
| Raw | 39.099 | 66.926 | 167.129 | 395.872 | 85.632 | 113.901 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK374601 | 2895 | 2e-24 | 1648 - 1707 | 100 | 60 / 60 | plus | ABC10853 |
| MLOC | AK357805 | 2039 | 2e-24 | 961 - 1020 | 100 | 60 / 60 | plus | ABC10853 |
| MLOC | AK365891 | 2747 | 2e-24 | 958 - 1017 | 100 | 60 / 60 | plus | ABC10853 |
| MLOC | MLOC_5299.3 | 2214 | 2e-24 | 459 - 518 | 100 | 60 / 60 | minus | ABC10853 |
| MLOC | MLOC_5299.1 | 871 | 2e-24 | 546 - 605 | 100 | 60 / 60 | minus | ABC10853 |
| MLOC | MLOC_5299.2 | 1169 | 2e-24 | 474 - 533 | 100 | 60 / 60 | minus | ABC10853 |
| JLOC1 | JLOC1_3403.4 | 2445 | 8e-25 | 1138 - 1197 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_3403.3 | 1604 | 8e-25 | 297 - 356 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_3403.2 | 1639 | 8e-25 | 332 - 391 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_3403.1 | 1612 | 8e-25 | 305 - 364 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC29229 | 365 | 3e-25 | 197 - 256 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC10853 | 1261 | 3e-25 | 567 - 626 | 100 | 60 / 60 | plus | ABC10853 |
| Harvest35 | U35_29775 | 365 | 3e-25 | 197 - 256 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_2929 | 1258 | 3e-25 | 567 - 626 | 100 | 60 / 60 | plus |
Contig Sequence (365 bp)
>U35_29775 365 Hv_44K_v2 CGACGAAGGCCCGGCCGCCGCCACCGACGGTTCCCGAGTGGCCTCGTACCTCGCGGCCTC CCAGGCGGACACCAAGCCGCCGGTGCGGGCGCGCGCACCACCGCAGCCGCCGTCTTCGTC GGCCGTGCGTAGCCCGGCGCGGGACCACGTCCACCACCACCCCTCCGACAAGGCGCCGCA CAACAAGCCCCCCGCCGTGGAGCATCATCACATGGATTCCAAGAACGCCCACCACCACCA CCACAACCACAGCAACCACGACTCGCCGCTGGTGGCCGCCGCCAACGGTGCCGGAGCCGG CGAGAAGCTTGGCGGGGAGCGGTTGGAGCTTCCCCGGATCTACATCTCGCTGTCCCGCAA GGAGA
Homology of Contig U35_29775 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |