barSeed - Barley Seed Development Database

Probe CUST_30559_PI390587928

Source Contig U35_29776

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30559_PI390587928	Hv_44K_v2	TGTAACTTTTTCTTGGGCAGCTTTTGAAACTACTAGTATAAATCTGCTGGGTTCGATGGC	234	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80060.1	1053	2e-24	3 - 62	100	60 / 60	minus	ABC14163 ABC29230
Harvest21	ABC29230	312	3e-25	235 - 294	100	60 / 60	plus	ABC29230
Harvest35	U35_29776	312	3e-25	235 - 294	100	60 / 60	plus

Contig Sequence (312 bp)

>U35_29776 312 Hv_44K_v2
GTGGAAGGAGCCCCCGCCGCACCGGCGCACAACGGCAGCAGCACCGCCGCCACCGCCGCC
CCGTCCCGCGGCATCGGCTTCTCCCCCGCCGGCATCCTCCACGCCACCCACAGCGCCGCC
GCGCACGCCACCTGAGGCCGAGGGCCTCATCCCGTTCCCACCGCGTCCGTCATGGCGCGT
GGGCGTGGGGCAAAATCGTGCAAGAAGGAAATCCGCAGGGATTTTGTCGCGTCATGTAAC
TTTTTCTTGGGCAGCTTTTGAAACTACTAGTATAAATCTGCTGGGTTCGATGGCNAAAAA
AAAAAAAAAAAA

Homology of Contig U35_29776 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None