barSeed - Barley Seed Development Database

Probe CUST_30558_PI390587928

Source Contig U35_29777

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30558_PI390587928	Hv_44K_v2	CGCTCACTCGCGAGTACGCGCCGCTGCTCTCGTACCGGGCGCACGCCTCCCTCGCGCTGC	210	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376069	1492	3e-21	339 - 398	97	58 / 60	plus	ABC29663
Harvest21	ABC29232	270	3e-25	211 - 270	100	60 / 60	plus
Harvest35	U35_29777	270	3e-25	211 - 270	100	60 / 60	plus

Contig Sequence (270 bp)

>U35_29777 270 Hv_44K_v2
CTCCCTGTCTCGTGCTCCACGGCCGCCCGCCGGGGCCCCGCTCCGGCGCCGACCCCGCCG
CGCTGTTCCTCTCGCTCTCCCCCGGGGCCAACGCCAGCATCGCCGCCGACCTGCGCGCGC
TCACGGCCGGGCCGCACCTCGCGGGGACGCCCGGGGCGGCGGGCGTGGCCGCCCACGTGC
ACGCGCGGNTCCGCGCCGCGGGGCTCCGNACGCTCACTCGCGAGTACGCGCCGCTGCTCT
CGTACCGGGCGCACGCCTCCCTCGCGCTGC

Homology of Contig U35_29777 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None