barSeed - Barley Seed Development Database

Probe CUST_3054_PI390587928

Source Contig U35_11636

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3054_PI390587928	Hv_44K_v2	CAAGTTTCATCTCCAATCCTTTGTGTCATTCAACGCAGCACATAAAACAATAATAGCACT	1081	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_48422.4	4352	2e-24	911 - 970	100	60 / 60	minus	None
MLOC	MLOC_48422.1	4157	2e-24	929 - 988	100	60 / 60	minus	None
MLOC	MLOC_48422.5	812	2e-24	430 - 489	100	60 / 60	minus	None
MLOC	MLOC_48422.2	4399	2e-24	955 - 1014	100	60 / 60	minus	None
MLOC	MLOC_48422.3	4206	2e-24	952 - 1011	100	60 / 60	minus	None
JLOC1	JLOC1_31104.3	4644	8e-25	3381 - 3440	100	60 / 60	plus
JLOC1	JLOC1_31104.2	4409	8e-25	3172 - 3231	100	60 / 60	plus
JLOC1	JLOC1_31104.1	4435	8e-25	3172 - 3231	100	60 / 60	plus
Harvest35	U35_11636	1141	3e-25	1082 - 1141	100	60 / 60	plus

Contig Sequence (1141 bp)

>U35_11636 1141 Hv_44K_v2
GTGAAAGCTTGTCTTCCGTGCAACCGGAAACAGAATCCGACTGGAAACTAGCATTTCGAA
TCTTTGGAAATTTTACTGTTGTATCCTCAGTTGTTGCGCTAATTTATGTTTTTGCACACA
TCATCCTTGCAAGTCCTAGTGTAATTCAAGGTCTCGAGTTCCCTGGCCTAGACTTGCCGG
ATTCTGTTGGTGAAGTTGTGGTTTGTGGAGTTCTTGTTCTGCAAGGACAACGTGTCCTTA
ATATGATTGCACGGTTTGTCCAGGCAAGGAGGCAAAGAGGCGGTGATCATGGTGTCAAAG
CAAAAGGCGATGGCTGGTTGCTGACTGTTGCTTTGATAGATGGGACCAACTTAGCAGCAA
CAAAGTCATCGGGTTACTCTGATCCATATGTTGTATTTACTTGCAATGGACAGACAAAGA
CAAGTTCGATTAAGTTTCACACTCTTGAGCCTCAGTGGAATGAAATTTTCGAATTTGATG
CCATGGAAGACCCACCCTCGGTGATGGAAATAAACGTATATGATTTTGATGGACCTTTTG
ATGAAGTTGCCTCCCTTGGTCACGTTGAAATAAATTTCTTGAAATATAGTATATCTGAGC
TTGCCGACATTTGGATTCCTCTCAAGGGAAAGCTGGCTCAAGCATGTCAGTCAAAATTGC
ATTTAAGAATTTTCTTGAACAATTCAAGGGGTACAGAAGTTGTGAAGGATTACCTGGACA
GGATGGAGAAAGAGGTTGGCAGAAAGATTGCTATGCGGTCACCTCACACAAACTTAGAGT
TCCAGAAGATCTTTGCTTTGCCACCAGAAGAATTCCTTATCAATGATTTTACCTGCCATT
TAAAGCGCAAGATGCTCACACAGGGTCGCTTGTTTTTATCCCCAAGAATTATTGGGTTCT
ACACCAATCTTTTCGGCCATAAAACAAAATTCTTCTTTCTTTGGGAAGATATTGAAGAGA
TCCAGTTGGTTCCTGCAACTCTATCTTCGATGGGAAGCCCATCTCTGCTGATTACTCTTC
GCAAGGGCAGAGGATTGGATGCGAGGCATGGAGCAAAGCAACTGGACGATGAAGGGAGAC
TCAAGTTTCATCTCCAATCCTTTGTGTCATTCAACGCAGCACATAAAACAATAATAGCAC
T

Homology of Contig U35_11636 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g19400.1	1038	0.0	protein\|GRAM and C2 domains containing protein, putative, expressed
Brachypodium v1_2	Bradi1g43230.1	1031	0.0
Arabidopsis v10	AT1G03370.1	1020	3e-177	C2 calcium/lipid-binding and GRAM domain containing protein \| chr1:830968-834996 FORWARD LENGTH=1020