barSeed - Barley Seed Development Database

Probe CUST_30547_PI390587928

Source Contig U35_29790

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30547_PI390587928	Hv_44K_v2	CGAGGAGTGCTATTGGAGTTATGACCTCTGCTGTGTATGTTTAATATTATTACGTGTATG	297	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38571.1	2310	2e-24	399 - 458	100	60 / 60	minus	ABC22589
JLOC1	JLOC1_25087.1	1696	8e-25	352 - 411	100	60 / 60	minus
Harvest21	ABC29258	357	3e-25	298 - 357	100	60 / 60	plus
Harvest35	U35_29790	357	3e-25	298 - 357	100	60 / 60	plus

Contig Sequence (357 bp)

>U35_29790 357 Hv_44K_v2
CTTTTTCGATTCCTTCCCTTATTTCCGGGGATCGGAATTGTGTGGCACTGGTGCCACCAG
ACTCAGGGTAGCTATGGGTTCTTTGTGGGAAACAGTCACCTGTTTCCATCTGCTACCTCG
ACAACAGCTCTCTGGGTTTCTAAAGGAGCTACACTTTTGAAGCTGGCCTAGGAATGCTGC
AAGGCGCCTTCTTATGAGCCGCCATTGGCCTGAAAACACTGGATTTTGCATCACTCTTCT
ACTGGTGTTACTTGAAAGCTTTTGTGATTGCCCTGCGATCAAGAAGAGCTGGAGACCCGA
GGAGTGCTATTGGAGTTATGACCTCTGCTGTGTATGTTTAATATTATTACGTGTATG

Homology of Contig U35_29790 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None