barSeed - Barley Seed Development Database

Probe CUST_30538_PI390587928

Source Contig U35_29799

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30538_PI390587928	Hv_44K_v2	TTTCCTGCTTATTACTCTGTATATTGTTACTTATGGCAACAAGCGTTGATGCATTATGCA	541	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20963.1	942	2e-24	787 - 846	100	60 / 60	minus	ABC04876
Harvest21	ABC29271	619	3e-25	542 - 601	100	60 / 60	plus
Harvest35	U35_29799	619	3e-25	542 - 601	100	60 / 60	plus

Contig Sequence (619 bp)

>U35_29799 619 Hv_44K_v2
GAACACATAAAGTGTATTATGGTCTTAACAATCAGATTGTGAAAAACTGAAGATCTATAT
CAAAACAAATACAGAATACATCCAAGTGGCAACTGAACTTTGAAATTGTAGATGTCTTGT
AAAAAGTGTACTCCATCATGCACTACTCTGTATATTTGTGCAAGTCTGGTTGGCTGTTTT
TTTGTTAAATTCCATCGTGCTACTCCCTCTCTCTATATATATATGAATATATCTTATCGA
AAGCCCTTTGTGCACTGGAGTTCACCTAGGCCCATTTGCCAATCAATTGGTATGGGTCTC
ATTAGCTTTGAGATTGGTTGATTGTTGTTACTCCCTCCGTCCGAAATTACTTGTCCGGGA
GATGGATGTATCTAGGTGTATTTTAGTTCTAGATAAATTCATTTATATTCAATTTTTGAG
GCAAGTAATTCTAGACGGAGGGATTACATTATGGTTATAAGGTGGATGATGGTTCAAAAG
AGTGTAAAATCGATTCACACTATGCTTTAATCATATTGATTTTGTATTATCTGCATCATG
TTTTCCTGCTTATTACTCTGTATATTGTTACTTATGGCAACAAGCGTTGATGCATTATGC
ATAATTAAATGATCATATG

Homology of Contig U35_29799 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None