barSeed - Barley Seed Development Database

Probe CUST_30532_PI390587928

Source Contig U35_17241

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30532_PI390587928	Hv_44K_v2	GGGGAACTTTCCTACTGTATATTATGGATTGAACTGAACGGAGCAGAAATGCCTTTGTTG	1301	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.598	1.961	1.166	0.763	0.337	0.398
Raw	1312.382	2457.406	1300.147	1322.861	206.652	265.206

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370615	1027	2e-24	954 - 1013	100	60 / 60	plus	ABC07324
MLOC	MLOC_13497.1	1052	2e-24	18 - 77	100	60 / 60	minus	ABC07324
MLOC	MLOC_13497.2	641	2e-24	16 - 75	100	60 / 60	minus	ABC07324
MLOC	AK374320	1382	2e-23	1323 - 1380	100	58 / 58	plus	ABC07324
JLOC1	JLOC1_9147.2	671	8e-25	593 - 652	100	60 / 60	plus
JLOC1	JLOC1_9147.1	1053	8e-25	975 - 1034	100	60 / 60	plus
Harvest21	ABC07324	1355	3e-25	1276 - 1335	100	60 / 60	plus	ABC07324
Harvest35	U35_17241	1405	3e-25	1302 - 1361	100	60 / 60	plus

Contig Sequence (1405 bp)

>U35_17241 1405 Hv_44K_v2
GCCACCATACCAATCGCACCACCAGCCGACCGACGACCACGGCACCGACGGCGACCCCTC
GGCGACGGCGGCGATCCCCTCCGCCCCTCTGCTCCGCGCCGCACCGGAGACCCCAGCCGC
GATCCTCCCAGCCACGCCGCGCCCCCGCGTGGCCGCTCGGCTCGTTCGGCCAAATCCAGC
CCACCGCCCGCGGGGTCCCGATTTGCGGCTAGCCGCCCCCCGTGGATTGCGCGGCGCCCA
CCCTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGGGCGTTG
ACGGACGGGTGCGGCGCGCAGTGGTGGTGCCACCATGTTGCAGTGCCTGGAGGGGGTGAG
GCACCTCTGCGGCGTGCTCCTCAAGTGCTGCCACATCGACCTCAAGCATCCCAAGGGCCT
GGAGGATCCCGAGGTCCTCGCCAGGGAGACCGTGTTCAGCGTGAGTGAGGTCGAGGCGCT
GTACGAGCTGTTCAAGAAGATCAGCAGCGCCGTGATAGACGACGGGCTGATCAACAAGGA
GGAGTTCCAGTTGGCGCTTTTCAAGACCAGTAAGAAGGAGAGCTTGTTTGCTGACCGTGT
CTTTGATTTGTTTGACACAAAACACAACGGAATTCTAGGATTTGAAGAATTTGCCCGTGC
CTTATCAGTATTTCATCCAAGTGCCGCTCCTGATGAGAAAATTAACTTCTCTTTCCAACT
TTATGATCTGAAGCAGCAAGGTTTCATTGAAAGACAAGAGGTTAAGCAAATGGTTGTTGC
TACACTTGCTGAATCAGGAATGAATCTTTCAGATGAAGTCATAGAGAGCATCATTGATAA
GACTTTCGAGGAGGCAGACACAAAACATGATGGGAAAATTGACAAAGAAGAATGGCACAA
TCTAGTTCAAAGACATCCCTCATTACTGAAGAACATGACACTCCAATATCTGAAGGACAT
CACCACCACATTTCCAAGCTTTGTGTTCCATTCTCAGGTTGCCGATACCTAAAGTCCTGA
GAGCTTCTTCACTTCGATGGAATATCAGAAGACAGTCTCACTGCTTTGCTAAGCCTTTCC
AATGGCCGTCCGATGGTTCGGAGGAAGCTGTCGTAGTGTTCCAAAGCATACCGCATACTG
TATTCGGTTATTCCGCTGGTTTCTTTGTGTTCATAACGTTTTTCTTTTTCTTTTTTAGCT
TAGGGTGGGCTGCTAGTAGATCAGAATGTTCAAAGTTTCTTTGGTCTTTGTACAAAAAAA
GCTGGTTTGACCCTTTAGTTAACTGTGTATGTATTCTGTGTGGGGAACTTTCCTACTGTA
TATTATGGATTGAACTGAACGGAGCAGAAATGCCTTTGTTGATAAAAAAAAAAAAAATTT
ATTGTTTTCAAAAAAAAAAAAAAAA

Homology of Contig U35_17241 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g42840.1	226	1e-145	protein\|calcineurin B, putative, expressed
Brachypodium v1_2	Bradi4g02740.1	226	6e-141
Arabidopsis v10	AT5G55990.1	226	9e-131	\| Symbols: CBL2, ATCBL2 \| calcineurin B-like protein 2 \| chr5:22672189-22673579 FORWARD LENGTH=226