barSeed - Barley Seed Development Database

Probe CUST_30527_PI390587928

Source Contig U35_31537

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30527_PI390587928	Hv_44K_v2	ACAGCAGCACAGTGCACTCGAGTTCGAGCTCGTTGAACTCCTGCAGTGCAGTGCTAGCTA	19	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1579.1	1141	7e-23	129 - 188	98	59 / 60	plus	ABC02762 ABC02764
MLOC	MLOC_1579.2	1612	7e-23	129 - 188	98	59 / 60	plus	ABC02762 ABC02764 ABC02766
JLOC1	JLOC1_965.2	1141	4e-23	20 - 79	98	59 / 60	plus
JLOC1	JLOC1_965.1	1632	4e-23	115 - 174	98	59 / 60	plus
Harvest21	ABC02764	1505	1e-23	8 - 67	98	59 / 60	plus	ABC02764
Harvest35	U35_32075	449	3e-25	12 - 71	100	60 / 60	plus
Harvest35	U35_31537	451	3e-25	20 - 79	100	60 / 60	plus
Harvest35	U35_14488	1553	3e-25	41 - 100	100	60 / 60	plus

Contig Sequence (451 bp)

>U35_31537 451 Hv_44K_v2
ACCAACCCACTGGTGAAGTACAGCAGCACAGTGCACTCGAGTTCGAGCTCGTTGAACTCC
TGCAGTGCAGTGCTAGCTAGCGACTCCCTCGACAGCGTCCGGCAGTTCGTTGACGCGTTC
CGCCGCGTCGAGATGCCGCTGGATGTGCTGGTGTGCAACGCCGCCATCTACCGGCCCACG
GCGCGCACGCCGACCTTCACCGCCGACGGGCACGAGATGAGCGTGGGCGTGAACCACCTG
GGCCACTTCCTGCTCGCCCGCCTCCTCATGGAGGACCTCCAGAAGTCCGACTACCCGTCC
CGCCGCATGGTCATCGTCGGCTCCATTACCGGCAACAGCAACACGCTGGCGGGCAACGTG
CCGCCCAAGGCCAGCCTCGGCGACCTCCGCGGGCTGGCCGGAGGCCTCAGCGGCGCGTCC
GGCTCCCGCATGATCGACGGCGACGAGAGCT

Homology of Contig U35_31537 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g58200.3	286	4e-53	protein\|protochlorophyllide reductase A, chloroplast precursor, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	None