barSeed - Barley Seed Development Database

Probe CUST_30523_PI390587928

Source Contig U35_17246

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30523_PI390587928	Hv_44K_v2	GGAGACTGACTAAATTGTACTCCAGCTTATGACTTGTCGAAAATGATATTGGATTCCGTT	1539	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.131	1.158	1.147	0.968	0.535	0.506
Raw	5304.050	8510.013	7403.670	9619.757	1907.810	1961.150

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59849.1	1678	2e-24	1612 - 1671	100	60 / 60	plus	ABC07157
JLOC1	JLOC1_38978.1	2053	4e-23	1629 - 1688	98	59 / 60	plus
Harvest21	ABC07157	1626	3e-25	1540 - 1599	100	60 / 60	plus	ABC07157
Harvest35	U35_17246	1617	3e-25	1540 - 1599	100	60 / 60	plus

Contig Sequence (1617 bp)

>U35_17246 1617 Hv_44K_v2
GCCACTACCGCAAAATAGAGAAACGCAACTCCAAGCCGAGGACTCCCTCGCGACCTCCTC
CTCCGCCGCCGCCGCCCGCCCGCCGAAGCTTGGTCCAAGCCGGAGCCGAGCGGACAGGAA
GGGGCGGCCAAGATGCCGACGGTCACCTGCAACGCCTGCAACGCGGCGTTCGAGGAGGAG
GAGGAGCAGCGCCTCCACTACCGCTCCGAGTGGCACCGCTACAACCTCAAGCGCAAGGTG
GCTGGAGTTCCTGGAGTTACCGAGGCTCTGTTTATTGCTAGACAAACTGTTTTAGCAGAG
GGAAGCAATTCTACCATTGCTCCTCCAATGTCTTACAGCTGTGCTCTTTGTGGAAAAGGG
TACAGGAGTGCAAAAGCTCATGCCCAACATCTCACCACGCGATCACATCTCTTGAGAGCT
TCTCAGGAGCCCAATGCCTCCACTGCTGCAGTAGTCAAGCCACTTCCTGAGCGAGTCCCT
CGTAGAGCCCCCTCCGCAATGGAAGAAGATGAAGATGAAGATGAGGATGAGGAGGACGAG
TGGGTTGAAATGGACCCAAGTGAGTTGGAGTCTACTTCAAACATGCAAGTAGATGAGGAC
TCTAAATCAGATGATGAGATGGCTGATCTTGAAATGTTGGATCCCTCTGTCTGCTTCATG
TGCGATCTCAAGCATGACAACATAGAGGACTGCATGATCCATATGCACAAAAAGCATGGT
TTCTTCATACCTGACAGTGAATACTTGAAGGATCCCAATGGCCTTCTTATATATGTTGGA
CTGAAGGTGAAGCGTGACTTTATGTGCCTCTACTGCAATGACAGATGCCAGCCTTTTCAA
AGTCTTGAGGCTGTCAGGAAGCATATGGATGCAAAAGGTCACTGCAAATTACGTTATGGA
GATGGCGGGGAGGATGAAGATGCTGACCTTGAGGATTTCTATGATTACAGTAGCAGCTAT
GTTGATGTGGAGGGCAAGCAGTTGGTTGCTGCAGGTGACATGGACAACAGCATTGAACTG
GGAGGTGGTGGATCTGAGCTCGTGATCACAAGTAAGAGCGAGAAGGGGAGACGTGTGACG
ACTCTTGGCTCCCGAGAGTTCATCCGCTACTACCGCCAGAAGCCACGGCCTTCGGTTGCA
GCAGACCGTGCACTTGCGCTTTCCCTGGCTTCCAGCTACAAGAGCATGGGCTTGGTGACG
GTCCAGTCCAAGGAGCAGATGGTGAGGCTGAAGGTCCTGCGAGCGATGAACAAGAGCGGG
GTGGAGACGATGAGGACCAAGATCGGGATGAAGAGCAACGTGATCCGGAACCTGCCCAAG
AACGTCCCGTACTAGTCGCGACGCCCACCCTTCCTGTAGGAGCAGTCAGTCCGTGGAGCT
CCAGCACTACTCACTGCCCTTGCCGCCATTGGCGTGTTTTGTCGACGATATCTAGAATAA
CAGCGTCCTTTGTCGAAGTTTTGTGTGGCTGCTGGTATCGACACTGCTATCTACACCCTT
CAGCCCAGCTGAACCTATGACGAGTCTCGTGTCTCATGCGGAGACTGACTAAATTGTACT
CCAGCTTATGACTTGTCGAAAATGATATTGGATTCCGTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_17246 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g47840.1	400	0.0	protein\|ZOS6-08 - C2H2 zinc finger protein, expressed
Brachypodium v1_2	Bradi1g33390.2	403	0.0
Arabidopsis v10	AT4G31420.2	405	2e-149	Zinc finger protein 622 \| chr4:15245987-15247763 REVERSE LENGTH=405