barSeed - Barley Seed Development Database

Probe CUST_30522_PI390587928

Source Contig U35_17247

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30522_PI390587928	Hv_44K_v2	GTGTGCACTATACTATTACTATACATGTGTGTGGTTTTTGTACTCCAACTGTTTTTGTGT	511	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	8.999	6.921	1.409	0.736	0.162	0.325
Raw	653.794	772.515	147.529	127.577	9.513	20.439

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55703.1	967	3e-21	278 - 331	100	54 / 54	minus	ABC07047
JLOC1	JLOC1_35970.1	814	2e-21	135 - 188	100	54 / 54	minus
Harvest35	U35_17247	613	3e-25	512 - 571	100	60 / 60	plus
Harvest35	U35_17248	596	6e-22	539 - 592	100	54 / 54	plus

Contig Sequence (613 bp)

>U35_17247 613 Hv_44K_v2
CCGCAACAACCATTTCATCCTAGTACCGAGCTCGCTCCCGGTTAGCGTTGGCCAGGCAGC
AGGCCAGCAGCGCTCGGTGTGGTGCTTGTGAGGCATGGCCGGCGACAGGAAGGCGCTGGC
GCTCACGTTGCTCGTCGTCGTCGCCGTCGTGGGGGCGCGCGCGGTGTGCGACATGGAGAA
CGACGACTTCATGGCGTGCCAGCCGGCGGCGGCGGCGACGACGGACCCGCAGCCGGCGCC
GTCGGAGGCGTGCTGCGCGACGCTGGGGAAGGCGGACCTCCGGTGCCTCTGCTCCTACAA
GAACTCCCCCTGGCTCAGCCTCTACAACATCGACCCCAAGCGCGCCATGGAGCTGCCGGC
CAAGTGCGGACTCACCACGCCGCCCGACTGCTAGATCCAGTTCCATGGAATGCCTCTAGC
CTCTAGCCTGGAGCTGGAGGTATAATGTACTACTGATTCGTGTGTAACATTGCTGGTGGA
CATTGAAGGGAAGGCTACTTCTTCTTCAAATGTGTGCACTATACTATTACTATACATGTG
TGTGGTTTTTGTACTCCAACTGTTTTTGTGTAAAAAAAAAAAAAAAAAGTTAATCCAAAA
AAAAAAAAAAAAA

Homology of Contig U35_17247 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None