barSeed - Barley Seed Development Database

Probe CUST_30520_PI390587928

Source Contig U35_17248

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30520_PI390587928	Hv_44K_v2	GTACTACTGATCCGTGTGTAACATTGCTGGTGGACATTGAAGGGAAGGCTACTTCTTCTT	473	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	8.857	7.028	1.545	0.680	0.237	0.389
Raw	1797.353	2200.183	449.675	331.507	37.021	67.727

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55703.1	967	2e-24	337 - 396	100	60 / 60	minus	ABC07047
JLOC1	JLOC1_35970.1	814	8e-25	194 - 253	100	60 / 60	minus
Harvest21	ABC07047	615	1e-23	447 - 506	98	59 / 60	plus	ABC07047
Harvest35	U35_17248	596	3e-25	474 - 533	100	60 / 60	plus
Harvest35	U35_17247	613	1e-23	447 - 506	98	59 / 60	plus

Contig Sequence (596 bp)

>U35_17248 596 Hv_44K_v2
GACGCCACCGCAACAACCATTTCATCCTAGTAGCACCGACGACCGACCAAGCTCGCTCCG
GTTAGCCAGGCAGCAGGCCAGCAGCGCTCGCTCGGTGTGGCACTTGTGAGGCATGGCCGG
CGACAGGAAGGCGCTGGCGCTCACGTTGCTCATCGTCGTCGTCGCCGTGGCCGTCGTGGG
GGCGCGCGCGGTGTGCGACATGGAGAACGACGACTTCATGGCGTGCCAGCCGGCGGCGGC
GGCGACGACGGACCCGCAGCCGGCGCCGTCGGAGGCGTGCTGCGCGACGCTGGGGAAGGC
GGACCTCCGGTGCCTCTGCTCCTACAAGAACTCCCCCTGGCTCAGCCTCTACAACATCGA
CCCCAAGCGCGCCATGGAGCTGCCGGCCAAGTGCGGACTCACCACGCCGCCCGACTGCTA
GATCCAGTTCCATGGAATGCCTCTAGCCTCTAGCCTGGAGCTGGAGGTATAATGTACTAC
TGATCCGTGTGTAACATTGCTGGTGGACATTGAAGGGAAGGCTACTTCTTCTTNCAATGT
GTGCACTATACTATTACTATACATGTGTGTGGTTTTTGTACTCCAACTGTTTATCT

Homology of Contig U35_17248 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None