barSeed - Barley Seed Development Database

Probe CUST_3051_PI390587928

Source Contig U35_11639

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3051_PI390587928	Hv_44K_v2	AGACCTGAAGATCATCCGTTTGATTTGCATGAGGAAAGGTTGCCAGATGCTGGATTTGAT	591	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357617	2428	2e-24	1142 - 1201	100	60 / 60	plus	ABC06940
MLOC	AK362485	3911	2e-24	1703 - 1762	100	60 / 60	plus	ABC12672 ABC22302
MLOC	MLOC_81547.1	206	2e-24	80 - 139	100	60 / 60	minus	None
MLOC	MLOC_46275.3	344	2e-24	156 - 215	100	60 / 60	minus	None
MLOC	MLOC_46275.2	680	2e-24	396 - 455	100	60 / 60	minus	None
MLOC	MLOC_7022.3	4759	2e-24	2440 - 2499	100	60 / 60	plus	ABC12672 ABC22302
MLOC	MLOC_7022.4	3385	2e-24	1330 - 1389	100	60 / 60	plus	ABC12672 ABC22302
MLOC	MLOC_7022.1	3733	2e-24	1570 - 1629	100	60 / 60	plus	ABC12672 ABC22302
MLOC	MLOC_7022.2	3692	2e-24	1608 - 1667	100	60 / 60	plus	ABC12672 ABC22302
JLOC1	JLOC1_54241.1	172	8e-25	47 - 106	100	60 / 60	minus
JLOC1	JLOC1_4623.1	4003	8e-25	1584 - 1643	100	60 / 60	plus
Harvest21	ABC21889	663	3e-25	592 - 651	100	60 / 60	plus
Harvest35	U35_11639	663	3e-25	592 - 651	100	60 / 60	plus

Contig Sequence (663 bp)

>U35_11639 663 Hv_44K_v2
CGTTACTCTCAATTTGGCACAACAGTTCCAGACCCAGTATCCAGGACTGAGGAGATCAAC
CGTCCCAGGGAAAGGAAGTCTTCAGCTAGTGGTTCCAATTGGAATGTGGAATTCAAGGAT
GCAGCATCTGCAGCACAGGCAGCCGCAGATTCTGCAGAGATGGCAAGCATTGCTGCCAGA
GCTGCTTGCCAACTTGCTAGCCGTGGAAACTTCTATGCAGAGCAAGATACCGGTGCTTAT
GAATCAGCTACTTATACAAATGATACAACACCCAGGAAGCAACAAGCTGGACGTTTGATG
AAGAATGATAAGAGTTTTAATGAGCAGAGTTCAGGTGTTAATGATCCGACGATGATCTCA
AGCAATACAAGAAAAGATAAAGAAAGAGCAGAAACAAACCGTGTGAGTAGCCAGAATATG
TCAACTCCTTACTCATCTCAGTTCCACTCTTATGCTCCTGAAAATCATACTGATATGTAT
GACATGCCAACCGAACCACATCGTGCTCATTCATCTGGGCCTCCATATTTTGATGATTCA
TCTGAGGCTCCATATTTTGATGATCCGTCTGAGAAAGAAAGCAATATCGGAAGACCTGAA
GATCATCCGTTTGATTTGCATGAGGAAAGGTTGCCAGATGCTGGATTTGATGGGCACCGC
ACC

Homology of Contig U35_11639 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g51010.2	957	3e-65	protein\|DUF292 domain containing protein, expressed
Brachypodium v1_2	Bradi2g47747.1	1130	6e-86
Arabidopsis v10	None