- Probe CUST_30516_PI390587928
- Source Contig U35_29220
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30516_PI390587928 | Hv_44K_v2 | GCTAGAGTTGACGGCGCGCTCATTGTTCAGCCTATTAATCACATGTTTGACCACTCTTTA | 336 | GeneList: tan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.807 | 0.732 | 1.471 | 1.964 | 0.891 | 1.186 |
| Raw | 19.144 | 24.979 | 47.945 | 98.573 | 15.957 | 24.007 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_15937.4 | 1383 | 2e-24 | 411 - 470 | 100 | 60 / 60 | plus | ABC13953 |
| MLOC | MLOC_15937.1 | 1257 | 7e-23 | 415 - 474 | 98 | 59 / 60 | plus | ABC13953 |
| MLOC | MLOC_15937.2 | 1410 | 7e-23 | 392 - 451 | 98 | 59 / 60 | plus | ABC13953 |
| MLOC | MLOC_15937.3 | 1451 | 7e-23 | 380 - 439 | 98 | 59 / 60 | plus | ABC13953 |
| JLOC1 | JLOC1_10957.2 | 2187 | 4e-23 | 395 - 454 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_10957.1 | 1787 | 4e-23 | 395 - 454 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC28447 | 744 | 3e-25 | 337 - 396 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC13953 | 1250 | 1e-23 | 299 - 358 | 98 | 59 / 60 | plus | ABC13953 |
| Harvest35 | U35_29220 | 744 | 3e-25 | 337 - 396 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_6423 | 1250 | 1e-23 | 299 - 358 | 98 | 59 / 60 | plus |
Contig Sequence (744 bp)
>U35_29220 744 Hv_44K_v2 GAACCACCAGAGGCCACCGCCATCTCTCGTTAATGGGCCTCCTCATCAGCAGCGGCTGCC ACCTGCAGATTCCTGACCCCGCTAGCCACAACCTCGCGCACTCTGCTATCATATATCCCA CCCACACCCGCGGCAACGAGGAGGAGGCTGCTCCTCTCCTCCACTACCGCCATTTGCGCC GCCGCCATGGCCGCCTCCGCTTCTTGCAAGGTCGTGGACTCCCACCTCCACGTCTGGGCC TCGCCGCTGCAGGCTGCCGAGGATTACCCCTTTTTCCCGGGCCAGGAGACGACGCTCCGG GGTGATGTGGACTTCTTGCTCCAGTGTATGGATGAAGCTAGAGTTGACGGCGCGCTCATT GTTCAGCCTATTAATCACATGTTTGACCACTCTTTAGTTACTAGTGTGTTGCAGAAGTAT CCATCTAAATTTATTGGTTGCTGCCTCGCAAATCCTGCAGATGATGGGAGCGGCATTAAA CAGCTTGAACATCTGATTGTGCAAGAAAAATACCGTGCTGTCCGTTTCAACCCGAACTTA TGGCCTTCAGGTCAAAAGATGACTAATGAGGTCGGGAGATCATTGTTTGCTAAGGCTGGA GAACTTGGAGCACCAGTTGGAATAATGGTGATGAAGGGGATCAGTTCATATATTCAGGAA ATAGAGGAGCTGTGTACGGATTATCCTGCAACCACTGTTATATTTGATCATATGNGCTNT CTGCAAGCCACCAACGAATGATGA
Homology of Contig U35_29220 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g32150.1 | 248 | 7e-85 | protein|amidohydrolase family protein, expressed |
| Brachypodium v1_2 | Bradi5g08360.1 | 352 | 4e-125 | |
| Arabidopsis v10 | AT2G35450.1 | 346 | 1e-86 | catalytics;hydrolases | chr2:14903201-14905361 REVERSE LENGTH=346 |