- Probe CUST_30514_PI390587928
- Source Contig U35_43516
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30514_PI390587928 | Hv_44K_v2 | CAACGTCCGGGGCGTGCGAGGGTACATGGTCCGGCTGTTCCGTGACTGGATCTTTTACAG | 445 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.076 | 0.159 | 0.733 | 1.819 | 1.465 | 2.196 |
| Raw | 35.291 | 116.783 | 481.260 | 1902.712 | 519.500 | 856.570 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_64485.1 | 1666 | 2e-24 | 1379 - 1438 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_64485.2 | 3469 | 2e-24 | 1298 - 1357 | 100 | 60 / 60 | plus | ABC30693 |
| JLOC1 | JLOC1_42348.1 | 1606 | 8e-25 | 1298 - 1357 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC40276 | 505 | 3e-25 | 446 - 505 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_43516 | 505 | 3e-25 | 446 - 505 | 100 | 60 / 60 | plus |
Contig Sequence (505 bp)
>U35_43516 505 Hv_44K_v2 GCGACACCGACGTCTACTGGTTCCTCGTCAACAACACCGTCTCCGCAGAGCAGGAGGCCG GCACGGACCCCGCGAAGATCCTGCGGGAGGTCACGGACAACCTGGGCAGGAGCATGCCGG CGGAGTACCTGGACGTGGCGCGCCACTCCGACCCCGGCAACCTGTCGTGGGCGCCGCTGC TGTACCGCGCCCCTTGGGCCATCCTCAGGGGTCCGGCGGCACGCGGGCCGGTCACGGTGG CCGGCGACGCGTTCCACCCCATGACGCCCGACATGGCGCAGGGCGGGTGCTCCGCGCTCG AGGACGCCGTGGTGCTCGCGCGCGCTTTGTCTCGGGCAGCCACGCCCGCCGACGGCTTGG CCGCCTACGTGGCGGAGCGGCGTGGCCGGGCTGCCTGGCTCGTCGCCGGGGCTTACCTCT CCGGCTGGGTCCAGCAGGGCGGCACCAACGTCCGGGGCGTGCGAGGGTACATGGTCCGGC TGTTCCGTGACTGGATCTTTTACAG
Homology of Contig U35_43516 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi5g10017.1 | 436 | 4e-95 | |
| Arabidopsis v10 | None |