barSeed - Barley Seed Development Database

Probe CUST_30502_PI390587928

Source Contig U35_31544

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30502_PI390587928	Hv_44K_v2	TCAAATTAATCTTTCGCTAGCAATTCTTGTCAGGGCGACAATGGCTGACGAAGTTCAGGC	65	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54933.4	6620	2e-24	4765 - 4824	100	60 / 60	plus	ABC09200
MLOC	MLOC_54932.1	5607	2e-24	4422 - 4481	100	60 / 60	plus	ABC09200
MLOC	MLOC_54932.3	1704	2e-24	515 - 574	100	60 / 60	plus	ABC09200
MLOC	MLOC_54932.2	1650	2e-24	396 - 455	100	60 / 60	plus	ABC09200
MLOC	MLOC_54932.4	1218	2e-24	117 - 176	100	60 / 60	plus	ABC09200
JLOC1	JLOC1_35388.1	1872	8e-25	588 - 647	100	60 / 60	plus
Harvest21	ABC09200	1279	3e-25	34 - 93	100	60 / 60	plus	ABC09200
Harvest21	ABC09201	653	5e-23	20 - 78	98	59 / 60	plus
Harvest35	U35_31544	488	3e-25	66 - 125	100	60 / 60	plus
Harvest35	U35_15775	1305	3e-25	69 - 128	100	60 / 60	plus
Harvest35	U35_29141	671	5e-23	38 - 96	98	59 / 60	plus

Contig Sequence (488 bp)

>U35_31544 488 Hv_44K_v2
TCGAGCACTGTTGGCCTACGACAGCGAACTCGGCGACCAGTGTAGCCATCATCGTCTCCG
TCTCCTCAAATTAATCTTTCGCTAGCAATTCTTGTCAGGGCGACAATGGCTGACGAAGTT
CAGGCGCTCACCAAGGCCTTCTCAGGTCTGGGGGGTCTGGGCGTGGACGAGCGGACGATG
GTGGCGGCGCTGGCGAACTGGCGGAAGCAGCCGGAGAAGCGGGGGTTCCGGGAGAGCTTC
CCGGGGCTGTTCAAGGAGCACGGCGGCGTGATGGAGCGGTGCGAGGACGAGTACATGCTG
CACCTGGCCGCCGAGTTCTCCCGGTTCAAGAACCTGATGGTGCTGTGGGCGATGCACCCG
TGGGAGCGCGACGCCCGCCTCGCGCACCACGTCCTCCACCAGGCCCACCCCTCCGCCATC
GTCGTGGAGATCGCCTGCACCCGCTCCGCCGAGGAGCTCCTCGGCGCGCGCAAGGCCTAC
ATGGCGCT

Homology of Contig U35_31544 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g31750.1	320	2e-72	protein\|annexin, putative, expressed
Brachypodium v1_2	Bradi2g26760.1	317	7e-75
Arabidopsis v10	None