barSeed - Barley Seed Development Database

Probe CUST_30493_PI390587928

Source Contig U35_31549

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30493_PI390587928	Hv_44K_v2	TCATCGACTTCCTCTGTGAAAGCTTAAACATAAGCTATCTGAGTCCTTATCTGAAGGCAT	256	GeneList: plum2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.069	0.159	1.170	2.430	1.223	1.543
Raw	9.403	37.156	238.730	762.904	142.540	192.910

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357519	1402	2e-24	423 - 482	100	60 / 60	plus	ABC24735
MLOC	MLOC_61750.4	1472	2e-24	1017 - 1076	100	60 / 60	minus	ABC24735
MLOC	MLOC_61750.1	1561	2e-24	1115 - 1174	100	60 / 60	minus	ABC24735
JLOC1	JLOC1_40367.2	1629	8e-25	394 - 453	100	60 / 60	plus
Harvest21	ABC17439	705	3e-25	303 - 362	100	60 / 60	plus
Harvest35	U35_31549	316	3e-25	257 - 316	100	60 / 60	plus
Harvest35	U35_7047	507	3e-25	406 - 465	100	60 / 60	plus
Harvest35	U35_7046	705	3e-25	303 - 362	100	60 / 60	plus

Contig Sequence (316 bp)

>U35_31549 316 Hv_44K_v2
CTGCAGGCAGACAGAGACAGAGGTCCACCAAGGTCGTCAATGTCGGCAGCAGCAGCAGCA
GCGGCAGGCGGCAGCGCGCCACGCCCAGCCCTTCCCCTCGCTCAGGCAGTGTCCCTGGCG
CTGGCGCTGGCGCTGGCGCTCTCGCCGTCACCGGCGCTGGCGGCCGGGTTCAGCTGCGGC
CCGGGCGCCCGGCCTGTGGTGTTCAACTTCGGCGCCTTCCACCGCCCCACCGGCCGCTTC
TGCGACGGCCGCCTCATCATCGACTTCCTCTGTGAAAGCTTAAACATAAGCTATCTGAGT
CCTTATCTGAAGGCAT

Homology of Contig U35_31549 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None