barSeed - Barley Seed Development Database

Probe CUST_30489_PI390587928

Source Contig U35_17258

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30489_PI390587928	Hv_44K_v2	GCCTTTGCTGTATCTGTTCCACTAAAGTGAAATCAAGAACAGGGCTTGGCGACCAAAAAA	1579	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364918	2275	3e-21	2222 - 2275	100	54 / 54	plus	ABC08246
JLOC1	JLOC1_28903.1	1624	5e-22	1529 - 1583	100	55 / 55	plus
Harvest21	ABC08246	1465	2e-22	1370 - 1424	100	55 / 55	plus	ABC08246
Harvest35	U35_17258	1675	3e-25	1580 - 1639	100	60 / 60	plus

Contig Sequence (1675 bp)

>U35_17258 1675 Hv_44K_v2
GGGCATCGCCGAGAGCGAAGGCCCCGGCCAGTACAACTTCGCCGGCTACATCGAGCTCAT
GGAGATGGCCAAGAAGGCCGGGCTCAAGGTGCAGGCCGTCATGTCTTTCCACCAGTGCGG
CGGCAACGTCGGAGACTCAGTCACCATACCACTTCCGAAATGGGCATTGGAGGAGATGGA
CAAGGACCAGGACCTGGCGTACACGGACCGGAGCGGTCGCCGCAACTACGAGTACATCTC
GCTGGGCGCGGACGCGCTCCCGGCCCTCAAGGGCCGCACCCCGGTCCAGTGCTACGCCGA
CTTCATGCGCGCCTTCCGCGACCACCTCGCCCCCTACATGGGCAACACCATCTGCGAGAT
CCAGGTCGGCATGGGCCCCGCCGGCGAGCTCCGCTACCCCTCCTACCCGGAGAGCAACGG
CACCTGGTCCTTCCCCGGCATCGGCGAGTTCCAGTGCTACGACCGCTACATGCGCTCCAG
CCTCAAGGCCGCCGCCGAGGCCGTGGGGAGGCCCGAGTGGGGCAACGCCGGCCCCGAGGA
CTCGGGCACCTACAACCAGTGGCCGGAGGACACCGGCTTCTTCCGCCGCGAGGGCGGCTG
GAACACCGACTACGGCCAGTTCTTCATGAGCTGGTACTCCCAGATGCTCCTCGAGCACGG
CGAGCGCATCCTCTCCGCCTGTTCCTCCGTCTTCACCGGCACCCCAGGGGTCAAGGTCTC
CGTCAAGGTGGCCGGCATCCACTGGCACTACGGCACCCGCTCCCACGCGCCCGAGCTCAC
CGCCGGCTACTACAACACCAGGAACCACGACGGCTACCTGCCCATCGCGCGCATGCTCGG
CCGCCACGGCGCCGTGCTCAACTTCACCTGCGTCGAGATGCGCAACCACGAGCAGCCGCA
GGACGCGCAGTGCATGCCCGAGGCGCTCGTGCAGCAGGTCGCCAACGCAGCCAAGGACGC
CGGCGTGGGGCTCGCCGGGGAGAACGCCCTGCCCAGGTACGACGAGACGGCGCACGACCA
GGTGATCGCCACCGCCGCCGAGAAGGCCGAGGAGGACCGCATGGTGGCCTTCACCTACCT
CCGCATGGGCCCCGACCTCTTCCAGCCCGACAACTGGCGCCGCTTCGCCGCCTTCGTCAA
GCGCATGACGGAGACCGGCGTGAGGGACGTGTGCCGGGAGCAGGTGGAGCGCGAGGCACA
GAGCGTCGCCCACGCCACACAGGGCGTCGTCCAGGAGGCCGCCGTCGCCCTCACCAACTA
ATCTCTTCAACTATGCATGCATACATACGTACCTACGTACTACACTACAGTATGATCGAA
CAAGGTGTGTGCCGAACCAAGGTGGGAAGGAAGGAAAACATAGGGGGATCGATTGATCGA
TCGATCGATCGGGTGACTTGGGAGTAGTTGCCGCGTCTGAAGAGCTCTCGATGGCATGGC
GATGCCGGTTTCGGTTTCAGTTTCGGCGTCGCTTAGCTCACTCGAAGCTTGCAGGGGACT
GATGTACTACTACGTACTAAGCTGCCGCAGTAGCAGTGCTGCACTGTAAGATCGATACTC
CAAACAAAAATGTTGTAACGCCTTTGCTGTATCTGTTCCACTAAAGTGAAATCAAGAACA
GGGCTTGGCGACCAAAAAAAAAAAAAAAAAGTTTTGGAGCGGATTGACTGAAAAA

Homology of Contig U35_17258 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g04770.1	558	protein\|beta-amylase, putative, expressed
Brachypodium v1_2	Bradi1g75610.1	574
Arabidopsis v10	AT3G23920.1	575	\| Symbols: BAM1, BMY7, TR-BAMY \| beta-amylase 1 \| chr3:8641722-8644199 FORWARD LENGTH=575