barSeed - Barley Seed Development Database

Probe CUST_30488_PI390587928

Source Contig U35_17259

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30488_PI390587928	Hv_44K_v2	TGCAATTTGCGTCTTGAATGAATTTCTGCATTCCTTTTGGATGCTGAAGTTGACAAAAAA	714	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39690.1	908	7e-23	661 - 717	100	57 / 57	plus	ABC06046 ABC07418
JLOC1	JLOC1_25890.1	802	4e-23	660 - 716	100	57 / 57	plus
Harvest21	ABC07418	775	3e-25	705 - 764	100	60 / 60	plus	ABC07418
Harvest35	U35_17259	785	3e-25	715 - 774	100	60 / 60	plus

Contig Sequence (785 bp)

>U35_17259 785 Hv_44K_v2
CGGGGAAAACCCTTCTTTCCCCACGACCTCACCCGGAGAACCGCAGGCCGGCGGCGAGGA
AGAAGAAAAAGAAGAAAGCATCACCATGGTGGTCCGGATCCGGCTCGCGCGGTTCGGCTG
CCGCAACCGGCCGTTCTACCGGGTGATGGCCGCCGACAGCCGCTCGCCGCGCGACGGCAA
GCACCTCGAGGTCCTCGGCTACTACAACCCGCTCCCCGGGAAGGATGGCGGCAAGAGGAT
GGGGCTCAAGTTCGACCGGGTCAAGTACTGGCTATCTGTTGGGGCACAGCCATCAGACCC
CGTGCAGCGTATACTCTTCCGTGCCGGTGTTCTGCCACCACCACCGTTGCTAGCCATGGG
CCGGAAGGGTGGACATCGTGACAGGAACCCCATTCATCCGATGACTGGCCGTCCCTTGGA
CCTTGAGGGTGTCACGATTGTCGATGATCCTAATGCTGCTGACGGTGATGCTGAAGCATC
TACAGAACCTTCGTTGGAGGCGTGATAGATTTTCTGTTCTGGCCTATGGAGTGCTGCTGC
AAGATAAAATAATTTGTTTGTTGTGCTTCTGATAAGATTATGAACACGTAGTGTACGATA
TGCAACAATCTTGTCATGTAACTCTGCTTTGTTAGGCTTTGCTGCACCATGGGTTATCCG
GCCGTCTCCAGTCTACTATGTCGTGTCCTAATATGATTCCTTTTGAATGGATTATGCAAT
TTGCGTCTTGAATGAATTTCTGCATTCCTTTTGGATGCTGAAGTTGACAAAAAAAAAAAA
AAAAA

Homology of Contig U35_17259 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g32274.1	137	4e-84	protein\|30S ribosomal protein S16, putative, expressed
Brachypodium v1_2	Bradi4g34170.1	140	1e-94
Arabidopsis v10	AT5G56940.1	135	4e-70	Ribosomal protein S16 family protein \| chr5:23030879-23032200 FORWARD LENGTH=135