barSeed - Barley Seed Development Database

Probe CUST_30484_PI390587928

Source Contig U35_29231

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30484_PI390587928	Hv_44K_v2	GTGATGCTGAAGATTTGGAGCATATTGAAAAGCTTCGGCAAGTCAAAGCAGTACTGGAGG	504	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.580	2.438	1.943	0.798	0.540	0.481
Raw	19.422	44.300	33.552	22.966	3.403	3.547

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354857	3587	2e-24	1526 - 1585	100	60 / 60	plus	ABC14698
MLOC	MLOC_28192.1	552	2e-24	489 - 548	100	60 / 60	plus	None
JLOC1	JLOC1_18947.2	545	8e-25	481 - 540	100	60 / 60	plus
JLOC1	JLOC1_18947.1	550	8e-25	486 - 545	100	60 / 60	plus
Harvest21	ABC28461	579	3e-25	505 - 564	100	60 / 60	plus
Harvest35	U35_29231	579	3e-25	505 - 564	100	60 / 60	plus

Contig Sequence (579 bp)

>U35_29231 579 Hv_44K_v2
GGCAATGCTTTTAGGCAGATGGTTTGTGGTTTTGATCTCTTAAGGTGTGACGGAAGATAT
ATGTTTGTGATGTTAATGGATGGAGCTTCGTAAAAAACTCTTACAAGTATTATGACGATG
CTGCATGCATCATGCGAAAAATATTTCTTGATGCAAAAGCTCCTCATCTTTCATCAACCA
TTCCTCCAACCCTTCCTTGGAAATCTAAAGCACCAGATCAGTCTACTGAAGGCCTTACAC
GACAAGGAAGTGGGATTATTGGTACATTCGGTCAGTCAGAAGAACTACGCTGCGTCATTG
TTGTGATACGCCATGGTGATCGGACACCAAAGCAGAAGGTGAAACTGAAAGTTACAGAGG
AAAAACTTCTAAATTTGATGTTGAAGTACAATGGTGGAAAGCCAAGAGCTGAGACAAAAC
TGAAAAGTGCAGTACAATTACAAGACTTGCTAGATGCAACAAGACAACTTGTGCCACCAA
CTAGGTCAGGTCAGGAGAGTGATAGTGATGCTGAAGATTTGGAGCATATTGAAAAGCTTC
GGCAAGTCAAAGCAGTACTGGAGGAGGGTGGGCATTTCT

Homology of Contig U35_29231 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g48300.3	775	2e-97	protein\|histidine acid phosphatase, putative, expressed
Brachypodium v1_2	Bradi1g12140.1	1045	1e-99
Arabidopsis v10	AT3G01310.1	1056	4e-91	Phosphoglycerate mutase-like family protein \| chr3:94343-101603 REVERSE LENGTH=1056