- Probe CUST_30477_PI390587928
- Source Contig U35_29236
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30477_PI390587928 | Hv_44K_v2 | ATGGATACTTTGGCAACTCGAACCTTTCTTGGTTGGTTATGGTCTATCAATTGCTGACAT | 410 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.037 | 1.389 | 1.409 | 0.838 | 0.725 | 0.740 |
| Raw | 68.438 | 56.845 | 63.246 | 47.169 | 17.538 | 20.344 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_4479.2 | 2683 | 6e-21 | 503 - 560 | 97 | 58 / 60 | plus | |
| JLOC1 | JLOC1_4479.1 | 2709 | 6e-21 | 529 - 586 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC28468 | 470 | 3e-25 | 411 - 470 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_29236 | 470 | 3e-25 | 411 - 470 | 100 | 60 / 60 | plus |
Contig Sequence (470 bp)
>U35_29236 470 Hv_44K_v2 GGCCCCACGTGCCGGTACAGGTGCCCAGCAACGACGGCCGCCCGCAGCTACGCCGGCGAC CACTCCATAGGCAGATTTCCGCCCTTTGGCTGCAAGGGTCTTAATGGAGGCGAGACTAGC ATTTCCCCAGGAGAGCCCGCCACTTTCCATCATTTCGGCTGCTAAGATTGCAGGTGTTTC CATAATCATTGATCCAACCCTTGCCTCAGGTTCAGTGCCCACACTACACTTCAGTTCTGG GGATTTTATACATGGCGTCAACACAATTCTCCGGTACATTGCACGTGCTGCATCTGTTTC CAGCTTCTATGGCCAGGATGATATTCAGGCAGCACATGTTGATCAATGGCTCGAGTACGC ATCAGTCATTCTTTCAGGCTCTGAATTTGAAGTTGCTTGCTCCTTTATTGATGGATACTT TGGCAACTCGAACCTTTCTTGGTTGGTTATGGTCTATCAATTGCTGACAT
Homology of Contig U35_29236 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g16520.1 | 716 | 6e-51 | protein|glutamyl-tRNA synthetase, cytoplasmic, putative, expressed |
| Brachypodium v1_2 | Bradi2g10180.1 | 721 | 1e-56 | |
| Arabidopsis v10 | None |