barSeed - Barley Seed Development Database

Probe CUST_30474_PI390587928

Source Contig U35_29239

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30474_PI390587928	Hv_44K_v2	TGGTTCGTAATTTGTACGAGTGCATGAGACGAGAAGCAGCAGCAGTGAAAATACAAAAAA	79	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354074	4533	2e-24	1848 - 1907	100	60 / 60	plus	ABC13685
MLOC	MLOC_37560.3	3141	2e-24	831 - 890	100	60 / 60	plus	ABC13685
MLOC	MLOC_37560.4	3371	2e-24	638 - 697	100	60 / 60	plus	ABC13685
MLOC	MLOC_37560.1	4030	2e-24	1318 - 1377	100	60 / 60	plus	ABC13685
MLOC	MLOC_37560.5	3118	2e-24	356 - 415	100	60 / 60	plus	ABC13685
MLOC	MLOC_37560.2	4055	2e-24	1298 - 1357	100	60 / 60	plus	ABC13685
JLOC1	JLOC1_24326.2	4080	8e-25	1269 - 1328	100	60 / 60	plus
JLOC1	JLOC1_24326.1	4095	8e-25	1269 - 1328	100	60 / 60	plus
Harvest21	ABC28471	255	3e-25	80 - 139	100	60 / 60	plus
Harvest35	U35_29239	255	3e-25	80 - 139	100	60 / 60	plus

Contig Sequence (255 bp)

>U35_29239 255 Hv_44K_v2
GCAGAATTCGACGAGGGGAAACAGTTTGTTTTGGTTAGAAGAGCAGCAACACATCTACAA
TCTTTTGTTAGAGGGACCTTGGTTCGTAATTTGTACGAGTGCATGAGACGAGAAGCAGCA
GCAGTGAAAATACAAAAAAATGTGCGTCGTCACAAAGCACGCGGATCTTATTTACTACTG
CAAGCAGCTACAGTCACGCTGCAGACTGGTGCTAGGGCAATGTCTGCTCGCAACGAATTC
AGATTCAGAAAGGAA

Homology of Contig U35_29239 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None