barSeed - Barley Seed Development Database

Probe CUST_30471_PI390587928

Source Contig U35_31553

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30471_PI390587928	Hv_44K_v2	GCCTCCTCGTCGGCGACATCTGCTCATCAGTCCAAGAAATCAACAGCAGTACAGGACTAC	407	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355143	2837	2e-24	448 - 507	100	60 / 60	plus	None
MLOC	MLOC_57836.1	2815	2e-24	1980 - 2039	100	60 / 60	minus	None
JLOC1	JLOC1_37554.1	2874	8e-25	608 - 667	100	60 / 60	plus
Harvest21	ABC25589	648	3e-25	439 - 498	100	60 / 60	plus
Harvest35	U35_31553	467	3e-25	408 - 467	100	60 / 60	plus
Harvest35	U35_24189	648	3e-25	439 - 498	100	60 / 60	plus

Contig Sequence (467 bp)

>U35_31553 467 Hv_44K_v2
TGGAAAGCAGCTTCCTTTCCTGCCCCCCTCCTTCCAGCTCCCACGGTCCACGGATGCCGA
CGCCCACGACGGCCCGCCGCCGGCCGCCTCCGGCCTGCTGCTGCTGCCTCGTCTTGCTTG
TGCTCCTCCTCCCGGCCTGCCGCGCCTTCCCGCTCTGCACCGACTCCAGGGCCCCGCTGC
CGCCCAACGGGACGCTCGCCTTCTGCGGCGACTCCGCCGGCGCCGCCGCATGCTGCGACG
CCGCCGACGACAAGGCCCTGCGCGACCAGCACCAGGCCACCAACGTCTCCGACGCCGCAT
GCGCCGCCGTCCTCAAGGCCATCCTCTGCGCGAAATGCAATCCGTATTCTGCGGAGCTGT
TCGACGCCGGGCCGAAGATCCGGACGATCCCGTTCCTATGCAGCTCCGCCTCCTCGTCGG
CGACATCTGCTCATCAGTCCAAGAAATCAACAGCAGTACAGGACTAC

Homology of Contig U35_31553 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None