barSeed - Barley Seed Development Database

Probe CUST_30469_PI390587928

Source Contig U35_31554

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30469_PI390587928	Hv_44K_v2	GACCTCGGCTTCTGGCTGCGCTGGCGGGTGGCCGTGTGCGCGCTCTGGGTGCTCTGCTGC	318	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369336	2011	2e-24	740 - 799	100	60 / 60	plus	None
MLOC	AK373198	1630	2e-24	290 - 349	100	60 / 60	plus	None
MLOC	MLOC_12477.1	1701	2e-24	254 - 313	100	60 / 60	plus	None
MLOC	MLOC_12477.2	1696	2e-24	254 - 313	100	60 / 60	plus	None
JLOC1	JLOC1_8372.1	1740	8e-25	264 - 323	100	60 / 60	plus
Harvest35	U35_31554	378	3e-25	319 - 378	100	60 / 60	plus

Contig Sequence (378 bp)

>U35_31554 378 Hv_44K_v2
ATGCCACCCGCGTGCCGCCCCAGTCCGTTGGTTGGTTGCAACGACGCCTCCTCCTCCTCC
CTCCTCCCCCCTCCCCGCATTGCGCCCAGCTCTCCTCTTCTTTAGCCGCAAGGCGCGCGC
GCCAGAGCGACGCGGACAAGCAGGGCGCCGCTCTGCAGCTCCGCATTGCACCAAGAAGCA
GCCGCTCCGGCAGAGATTGCGCCCCTTCCTTCCTCGCTCCGGCAGGCGGCAGCGCATGCC
CGGCTGACGGCGATGCGGTTCACGGCGGGGGGCTCGTCGACGCGGTCGTGGCAGCCCAGG
CCGACGGCGGACACCACGGACCTCGGCTTCTGGCTGCGCTGGCGGGTGGCCGTGTGCGCG
CTCTGGGTGCTCTGCTGC

Homology of Contig U35_31554 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None