barSeed - Barley Seed Development Database

Probe CUST_30463_PI390587928

Source Contig U35_31557

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30463_PI390587928	Hv_44K_v2	GTACATGTGTCTGACATTACAAATGTAGCTCTTGAGGCCATTGGTACGCTCAGCAAAAAC	395	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18524.2	5305	7e-23	1932 - 1991	98	59 / 60	plus	ABC03496 ABC22790
MLOC	MLOC_18524.4	4938	7e-23	1932 - 1991	98	59 / 60	plus	ABC03496 ABC22790
MLOC	MLOC_18524.3	5815	7e-23	1065 - 1124	98	59 / 60	plus	ABC03496 ABC22790 ABC23222
MLOC	MLOC_18524.1	2321	7e-23	1293 - 1352	98	59 / 60	plus	ABC22790
JLOC1	JLOC1_12821.2	4169	4e-23	2932 - 2991	98	59 / 60	minus
JLOC1	JLOC1_12821.1	4071	4e-23	2834 - 2893	98	59 / 60	minus
JLOC1	JLOC1_12820.1	6029	4e-23	1295 - 1354	98	59 / 60	plus
Harvest35	U35_31557	458	3e-25	396 - 455	100	60 / 60	plus

Contig Sequence (458 bp)

>U35_31557 458 Hv_44K_v2
TCGATGATCAAGATCAAGGTGGCAATTATGCTAACTACTATTTCCCTCCTTCGGTACAGC
GCTTGAGTTTGCTCTACATGGGAACAAATGAGATGCAGATATTATTTCCATATGGCGCCA
CACTCAAGAAGTTAGACCTTCAGTTTACATTCCTTACTACAGAGGATCACTGTCAATTAG
TCCAGCGCTGCCCAAATCTAGAAGTTCTGGAGGTGAGGGATGTGATAGGAGATCGAGGGT
TAGAAGTTGTTGCACAGACCTGCAAGAAATTACATCGACTCAGAGTCGAGAGAGGAGACG
ATGATCAAGGAGGTCTCGAGGACGAACAAGGTAGAGTGACACAAGTAGGATTGATGGCTG
TAGCTCAAGGCTGTCCTGATTTGGAGTACTGGGCAGTACATGTGTCTGACATTACAAATG
TAGCTCTTGAGGCCATTGGTACGCTCAGCAAAAACCTG

Homology of Contig U35_31557 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g15880.4	590	2e-74	protein\|coronatine-insensitive protein, putative, expressed
Brachypodium v1_2	Bradi1g67160.1	588	7e-80
Arabidopsis v10	None