barSeed - Barley Seed Development Database

Probe CUST_30455_PI390587928

Source Contig U35_43531

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30455_PI390587928	Hv_44K_v2	ATTCAGATTTGAGTTGAGTTGCGTTGGGAAGCGCTGTAATCCATGTGGTTTCTCAAAAAA	10	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67184.1	4237	2e-23	465 - 522	100	58 / 58	minus	ABC02951 ABC02952 ABC02957
MLOC	MLOC_67184.2	1348	2e-23	150 - 207	100	58 / 58	minus	ABC02951 ABC02952 ABC02957
JLOC1	JLOC1_44326.1	1734	1e-23	1395 - 1452	100	58 / 58	plus
Harvest21	ABC02952	988	3e-25	919 - 978	100	60 / 60	plus	ABC02952
Harvest35	U35_43531	544	3e-25	11 - 70	100	60 / 60	minus

Contig Sequence (544 bp)

>U35_43531 544 Hv_44K_v2
TTTTTTTTTTTTTTTTGAGAAACCACATGGATTACAGCGCTTCCCAACGCAACTCAACTC
AAATCTGAATCATCTGACAGGGTATTGTTTATGGTTCGTTTTTACCCGCCCGAGACTGAC
ACCATGTGCCGGTGCCCGTAGCAAAATCCACACAAAAATCCACAGCCTCACCGGCATTTG
CTTCTTGGAGAATTCATTCACCTTTATTTACTATCTTCATCAATCCGTCTCGGCAACAAT
CACCATATGACAGGTGAGAAAACAGGGAGAGCGAGATCAAGAAGAGTGCGGATGGATCAA
TGGATGGCTGCCGAAATGTATACATGCACGATCGACCGACGATCAGAGGGAGCGAGCACC
GGCGGCCAGTGAAGATCATGCCCGGGAGCACTCGGCGGGGAACCCCTTGGGGAACCGCCA
GCCGTCGGCGCAGTAGTCGTAGTGCATGTAGTTCCTCCTGGCCCAATCGAGGGTGCCGCG
CTCGGCGGCGCTGGGCCGGCGCGTCATCCAACGGTCGGTGCCGGCGGGGCATGCNAACGG
GCGG

Homology of Contig U35_43531 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None