barSeed - Barley Seed Development Database

Probe CUST_30437_PI390587928

Source Contig U35_31560

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30437_PI390587928	Hv_44K_v2	AAGTTAGGGTACTGGATATCAATCTTACCATAGGTGAGATTCGTGTTCTGAACCCACACA	344	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252642.1	2608	2e-24	335 - 394	100	60 / 60	plus	ABC13383 ABC30738
MLOC	MLOC_13765.3	1402	2e-24	807 - 866	100	60 / 60	minus	None
MLOC	MLOC_13765.2	1573	2e-24	864 - 923	100	60 / 60	minus	None
MLOC	MLOC_13765.1	1867	2e-24	865 - 924	100	60 / 60	minus	ABC41162
JLOC1	JLOC1_9350.2	2740	8e-25	532 - 591	100	60 / 60	plus
JLOC1	JLOC1_9350.1	2735	8e-25	527 - 586	100	60 / 60	plus
Harvest21	ABC25455	662	3e-25	536 - 595	100	60 / 60	plus
Harvest35	U35_31560	404	3e-25	345 - 404	100	60 / 60	plus
Harvest35	U35_26318	662	3e-25	536 - 595	100	60 / 60	plus

Contig Sequence (404 bp)

>U35_31560 404 Hv_44K_v2
AATCGGACGCGCGGTCGCACCGGCGGCACAGGCACCGGTGGCGGGTGGAGTCCGAGGGCC
GACGAAGCCGGCGGCGGAAGCTCCGGCCATGGAGTTGGACCGGCCACTGATCGCCGGTCA
GAAGCTCTTACTACTTGTTGCTGCCACCCTAGTCCTACATCATAGTACTACGGCTAATGG
GGCAGGGTCCTCTGGGGGCATCAGCATGGCACAGCCTGGCTGCCCAGATAAGTGTGGCAA
CATCAGCATCCCGTACCCGTTTGGCACCGGAAAAGGCTGCTTTCAAGAACCCTTTAATGT
CACATGCAATCAGACCGGGGCGTATCTGGCCTCAACCGAATCGGAAGTTAGGGTACTGGA
TATCAATCTTACCATAGGTGAGATTCGTGTTCTGAACCCACACA

Homology of Contig U35_31560 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None