barSeed - Barley Seed Development Database

Probe CUST_30429_PI390587928

Source Contig U35_17272

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30429_PI390587928	Hv_44K_v2	AGAGCGAAAAACGCAAGCAAGGAATTGCATGTGAAATTGATGGTTATGTTTTATAAGCGG	682	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.508	4.518	1.500	0.756	0.240	0.413
Raw	153.537	314.581	91.060	73.988	7.009	15.119

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_41792.1	3725	5e-22	3600 - 3654	100	55 / 55	plus
Harvest35	U35_17272	742	3e-25	683 - 742	100	60 / 60	plus
Harvest35	U35_33270	587	2e-22	1 - 55	100	55 / 55	minus

Contig Sequence (742 bp)

>U35_17272 742 Hv_44K_v2
GGAGGCTCGGGAGAGCCGACGACGCGCTGGCGTCCGACCTCGCCGTCGATGCGTCCGCCT
GCTCCGTGCACTGCCACGCCTACGCCGCCACAGACGCGTCCAAGGTGAGGAAGGTGGATT
CGATCAGGCAGCAGCTGCGGATGCGCGGGTTCCGGTGCAACCTCGTCTACACGCGCGCGT
GCACGCGCCTCAACGTCATCCCTCTCTCCGCTTCCCGGCCGCGCGCGCTGAGGTACCTGT
CGATACAGTGGGGGATCGATCTCTCCAAGGTGGCGGTGCTCGTGGGCGAGGCCGGAGACA
CCGACCGCGAGAAGCTCCTCCCGGGGCTGCACAGGACGCTGATCCTGCCGGGGATGGTCT
CCCGCGGCAGCGAGCAGCTCGTCCGCGGCGAGGACGGGTACGCCACGCAGGACGTCGTGG
CCATGGACTCCCCGAACATCGCCACGCTCGCTGAAGGCCAGGCTCTCTCCGAACTTCTCA
AGGCCATGTGAAGAGCACGGCTCGTACTACGTAATCCCGGCCTGTGATTTTGGCAGGATG
ATGACTGCAGAATTTGCATACAATGCAAGGTATAATTTCTTATGGATGTGCAAGCATGAG
CAAACATGTCGCTAATAATTCCTTTATGTCTTAGCATGCCTCCCTCAGGCCTGTTGTACA
TATATACACCTTATAAATGAGCAGAGCGAAAAACGCAAGCAAGGAATTGCATGTGAAATT
GATGGTTATGTTTTATAAGCGG

Homology of Contig U35_17272 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g12810.1	1106	2e-73	protein\|sucrose-phosphate synthase, putative, expressed
Brachypodium v1_2	Bradi4g21750.1	1081	8e-75
Arabidopsis v10	None