barSeed - Barley Seed Development Database

Probe CUST_30417_PI390587928

Source Contig U35_21980

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30417_PI390587928	Hv_44K_v2	CCCTGGATATGGTCAGGTTAATTATGTGTTTTGTAACTGTTTCATGATGCTTCGTGATGT	1008	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14328.2	2967	2e-24	336 - 395	100	60 / 60	plus	ABC18155
MLOC	MLOC_14328.1	4700	2e-24	2941 - 3000	100	60 / 60	plus	ABC18155
JLOC1	JLOC1_9781.3	3892	8e-25	2555 - 2614	100	60 / 60	plus
JLOC1	JLOC1_9781.2	5575	8e-25	4238 - 4297	100	60 / 60	plus
JLOC1	JLOC1_9781.1	3956	8e-25	2619 - 2678	100	60 / 60	plus
Harvest21	ABC18155	1110	3e-25	1009 - 1068	100	60 / 60	plus	ABC18155
Harvest35	U35_21980	1110	3e-25	1009 - 1068	100	60 / 60	plus

Contig Sequence (1110 bp)

>U35_21980 1110 Hv_44K_v2
GGTTGTGCATGTGCCTGCCATGAGCGCAAGCTCTGAGCCACCCAGGCAGAAGCGCGGCCG
TCCGCGGAAGAACACCCCAGATGGTACCAAGCTGCCAGCTATCTTCCCTGCACCATATCC
TATTGGTCTTGTGGCTTCCCCGACACCAGCTCTACCCCCGGGCTTCACGTTGGGATTGTG
GGGCGTAGGCGTCGTGAGGCCCCAGGCACCACCAGCACTGCCGTCGCCATTACCGCCACC
ACCCTTTGAGAATTCAAAACAACGGGCCAAGAAGAAGAGGGTATGGCCGCCGAGCTCCAC
AACCAGCAAGAAGCAGCGGGAGTTGGCTGTAGCAGAGCCAGGTGCCACTGGATTAGTTCC
TCAGGTCATCACAATCCAAGGTGGAGAGGATGTANCAGTGAAAGTCATGTCCTATTGTGG
GAATGGGTGGGCAGTTTTTATCATGTCTGCCGAGGGCGCCGTACGCAATGTGACATTGAA
GCAACCAGCTTCTTCCTGTGGAACTGTTATTTATGAGGGTTATTTTGACATTGTCTCTTT
GTCTGGCGTGTACGTGCCGTCAAAAAGTAATGGACTGAGCACTCTAAAAGGTGGATTCAG
TATTTCGCTTGTTGGTCATGATGGTCGTCTCTTCGGCGGTGGGTTAGCAGGACCTCTGAT
TGCAGCTTCACCTGTTCAGGTGGTCATTGGAAGGTTTGCAGCTGATGAGAAAGAGGAGAT
CAAACAGGATGTGGCCAGTGGAAGGGTTGCAGCTGATGAAAAGGAGGAGATCAAACAAGA
TGTTGCCAGTGGAACTCCAGGTGCTACTACACCAACTGCTGGTCCGAATGAACCCTCTAG
CGGTCCAGGAAGCCCATCAAACTAGGGCGCGGCTCGCGCATTCAACAGCAGCTTCCTATT
TCCAGATGCCAGTCAGCTTAAAATCCTAGCTTTTCCCTACTATTTCCAAATGCTTATCTT
TCAACTCGAACTTGTTGAACTTTTCGGTCTCGTTATATGATGTATGGCCCCTGGATATGG
TCAGGTTAATTATGTGTTTTGTAACTGTTTCATGATGCTTCGTGATGTTATTGTTATGAA
CTGTTTCATGGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_21980 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g22030.1	379	2e-52	protein\|AT hook motif domain containing protein, expressed
Brachypodium v1_2	None
Arabidopsis v10	None