barSeed - Barley Seed Development Database

Probe CUST_30416_PI390587928

Source Contig U35_21981

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30416_PI390587928	Hv_44K_v2	GGCTGCTGGAACTACCCTATATCATTAATATGTATGCTGTGGGAGGCCATTTAGCCCAAA	932	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.573	2.274	3.715	2.337	0.522	0.387
Raw	738.098	4565.310	6374.617	6245.253	492.159	399.898

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369226	1712	2e-24	1644 - 1703	100	60 / 60	plus	None
MLOC	MLOC_17721.1	2009	2e-24	1906 - 1965	100	60 / 60	plus	None
MLOC	AK362090	2662	7e-23	2606 - 2662	100	57 / 57	plus	None
JLOC1	JLOC1_12237.1	1824	8e-25	1735 - 1794	100	60 / 60	plus
Harvest35	U35_21981	1006	3e-25	933 - 992	100	60 / 60	plus

Contig Sequence (1006 bp)

>U35_21981 1006 Hv_44K_v2
GGCGAATTGGGCCCTTTCGAAGATGCTCGAGCGGCCGCTGTCATGCCTTTCCCTCANACA
TAGTTTGGGTTGCAGGTGACGGACGTCAACACTAGAGCAGTAATAAGATTCCGAGAGATG
GCTGGGAGGTCCCAGTAGGCGGCCATCACATTTTCAGCCATGTTGGGCAACTTTGCTCAA
TTTGCGTGATGTAGAGTTAGTGGGTAGCAAGAAATAAATAAAACGGCCGAGTCAAAGACA
GCTTTCTTTTTTCACATCAATCAGATGAAGAAAACAAGTGAAGGCTTCAGCGAGGTTTTA
TGAGGGAGAAGAAGCACGGGACTCTGCGAAACCAGGCACCATTGTTTGGTTATTGCATGC
GTAAGCGGCCGCTGCACATGAATAAGAATGAGGATGATTGGTATGCTAGGTTTGTCTCTG
CTGAAGGCGTTGGAAGGGCAGAGCAAGCATCGTCGCTCCGGCCTCATCTTGGTTCGGGAG
AAGTGATCGATAGCCGTGTTGCAGTTGAGAATACGGGTGCTGCACCTACCAACAGTTGCA
AGATATTTGGCATCTCCCTGGCTGAAAAGGTCCGAGCAAGGGATGAGATGGTTTGTGATG
ATGGTGGTGCCAACTACTCATCTCCAACCCAGCCCTTGAAATCCCTCGGCAACAGTTGTG
CCACTGTTCATGAGCAGAGGCCTGTTGTTGGCAGGGCGATTGACGTCCAGCAATGGATAT
GAAGCTCTGATCTAGGGGGCGGGCAGGCGGGCTGGATGCGCGAGTCGATCATCGTCATCT
GCTGGTGATTCTTGATTTGGAAGCAGAGAAGCGTCTGTTCTGACCATTTCCAGTCGAACC
TTGTGTATCTTTGAGTAGTCGTATGATAACCGGTGGAGTTGTTGTTATTCGGTGACCTAG
TACTTAGTTGGCCATCATCAGCCGTGACTTTTGGCTGCTGGAACTACCCTATATCATTAA
TATGTATGCTGTGGGAGGCCATTTAGCCCAAAAAAAAAAAAAAAAG

Homology of Contig U35_21981 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None