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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_30415_PI390587928Hv_44K_v2TCTCTCGATTTGAGTTCGGGCATGGGCACATGGATAAGAATGAGGATGATTGGTATGCTA486GeneList: darkgreen
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.3481.9775.9734.5260.7640.503
Raw 26.120244.176618.058752.65144.75831.722



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36209026622e-242022 - 208110060 / 60plus None
MLOCAK36922617122e-241060 - 111910060 / 60plus None
MLOCMLOC_17721.120092e-241322 - 138110060 / 60plus None
JLOC1JLOC1_12237.118248e-251151 - 121010060 / 60plus
Harvest21ABC247607033e-25487 - 54610060 / 60plus
Harvest35U35_219827043e-25487 - 54610060 / 60plus



Contig Sequence (704 bp)

>U35_21982 704 Hv_44K_v2
ATTTTGCAGAGTCTGCACAACTCCGCAAGGTCTTGCAAGGTCAAGAATTATTGGGTTATA
GAACTCATGATGGTACTGCTGTTGCTACTTCACAGCCATGTGAAGCAAGAAACTTGCAGT
ACATCGATGAACGAGGTTGCTCTAATAATGGGAGTAACAATGTCCTAGGGGGGGTCCCAA
GCCATGGTGTGAGAACACCACTTGGGATTCCCTACCATTGCTCTGGCTTTGGGGAGTCTC
AGAGATTCCAAAAGGTCTTGCAAGGTCAAGAAGTTTTCCGTCCGTACCGAGGAAGTCTGG
TTGATGCGCGCATGAGAAGTGGCGGCTTTCATCAACAGGATGGTCCTTATGCATCTGCCC
TGTTGGATAAATGGCGCGCGCAACAACAGCATGCATTCGGTTACGGGCCACCAGCACAAG
TTCTGCCGTCTCAGCCATCGTTATCACCACCTTCTGTTCTGATGTTTCAGAAGGCTGATC
CAAAGGTCTCTCGATTTGAGTTCGGGCATGGGCACATGGATAAGAATGAGGATGATTGGT
ATGCTAGGTTTGTCTCTGCTGAAGGCGTTGGAAGGGCAGAGCAAGCATCGTCGCTCCGGC
CTCATCTTGGTTCGGGAGAAGTGATCGATAGCCGTGTTGCAGTTGAGAATACGGGTGCTG
CACCTACCAACAGTTGCAAGATATTTGGCATCTCCCTGGCTGAA



Homology of Contig U35_21982 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os05g48870.92954e-75protein|auxin response factor 15, putative, expressed
Brachypodium v1_2Bradi2g16610.57201e-86
Arabidopsis v10None