- Probe CUST_30406_PI390587928
- Source Contig U35_33963
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30406_PI390587928 | Hv_44K_v2 | TTATTCTGTGTTAACTGATCCCAAGTTGATTACGGGCTTGGGACCAGACAGGAGCATTCT | 150 | GeneList: lightcyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.008 | 1.189 | 1.912 | 1.446 | 0.742 | 0.686 |
| Raw | 95.201 | 179.523 | 245.921 | 292.856 | 52.488 | 53.917 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_78237.1 | 1300 | 2e-24 | 646 - 705 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_52144.1 | 1286 | 8e-25 | 370 - 429 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC25909 | 1265 | 3e-25 | 856 - 915 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_33963 | 360 | 3e-25 | 151 - 210 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13111 | 1265 | 3e-25 | 856 - 915 | 100 | 60 / 60 | plus |
Contig Sequence (360 bp)
>U35_33963 360 Hv_44K_v2 TGCAAGAACCTTCTTCTTGAAGAGTGATAATGACTTTGTGAATCTTGACCGGCCACATCT TATAGCCATTCAAGATCCCATGGTACCTGATAACGATATTGGGAAGAATCCCTTCAACTA CTTCAAGGTGAAATCAGCATTTTCAAAGGCTTATTCTGTGTTAACTGATCCCAAGTTGAT TACGGGCTTGGGACCAGACAGGAGCATTCTGGGTACCATTGTCAGACCGGATTCGGTGCT CCTCGACCGTAAAGGCTGGAACACTGATGGTGCGTTAGCTGACATGTTAGTAGAGCCCTG GGAACCGTCGCCCCAATGGTGACGAACTAGTGTCCTCGGGTTGAGTATTTCTGGGCAGAG
Homology of Contig U35_33963 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g48210.1 | 631 | 3e-52 | protein|PAP/25A associated domain containing protein, putative, expressed |
| Brachypodium v1_2 | Bradi2g46260.1 | 620 | 3e-60 | |
| Arabidopsis v10 | None |