barSeed - Barley Seed Development Database

Probe CUST_30404_PI390587928

Source Contig U35_19671

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30404_PI390587928	Hv_44K_v2	AACTTGGCAGTGAAACTAGAATATTCAATGAGCTCGCCCTTTGTTAACGGGTTATATTTG	645	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.227	1.674	1.238	0.913	0.328	0.361
Raw	115.386	257.041	160.130	185.381	23.554	27.802

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC13107	705	3e-25	646 - 705	100	60 / 60	plus	ABC13107
Harvest35	U35_19671	705	3e-25	646 - 705	100	60 / 60	plus

Contig Sequence (705 bp)

>U35_19671 705 Hv_44K_v2
TGGCGCCCCTCTTCAAGCTGATGGGCAACGCCCTGTACATGGGCGGGCCGGGCGCGGGGC
AGCGCGCGAAGCTGGGCAACCAGATCGCCATCGCGTCCACCATGGTGGGGCTGGTGGAGG
GCATGGTGTACGCGCACAAGGCCGGACTGGACGTGGGCAAGTGGCTGGAGGCCATCTCCA
CAGGCGCCGCGGGGTCCAAGTCGCTGGACCTGTACGGGAAGCGGATGCTGGAGCGCGACA
TGGCGGCTGGGTTCTACGTCCGGCACTTCGTCAAGGACCTCGGGATCTGCCTGTCCGAGT
GCCAGACCATGGGGCTGGCGCTGCCGGGGCTCGCGCTCGCGCACCAGCTCTACGTGTCGC
TGCTTGCCCACGGTGAGGGCGGGCTCGGCACGCAGGCGCTGATACTGGCCGTCGAGCGGC
TCAACAACACTTGCCTTGACAAGAAAGGCGAGTGAAAGCCTACGAGAGTTTGGTTGATGC
AACATGAGAGAGTTGTTCCCCCGTGTATATGGGACTTGTTGCATGCTGTCTGTTCACGCT
TCACAGTGCTCAAATATTCAAATAAGATTGCAAAAATGGAGTTTTTCAGTTGCATCGATA
GTAAATTCGACTGTTTGGCAAATCAGCCTGTACTGAATGTCGATCAACTTGGCAGTGAAA
CTAGAATATTCAATGAGCTCGCCCTTTGTTAACGGGTTATATTTG

Homology of Contig U35_19671 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g53910.1	345	2e-97	protein\|dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi2g49440.1	317	6e-98
Arabidopsis v10	AT4G29120.1	334	8e-69	6-phosphogluconate dehydrogenase family protein \| chr4:14350861-14351865 FORWARD LENGTH=334