barSeed - Barley Seed Development Database

Probe CUST_3039_PI390587928

Source Contig U35_6260

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3039_PI390587928	Hv_44K_v2	GATTTTTGGATCTGTTAAGACTTAAGCGTGCAATCAATCAGCAGTTTTTACCATTGCAAA	472	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.177	0.262	0.696	1.418	1.198	1.508
Raw	4.331	10.388	28.578	91.856	26.185	36.401

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55820.3	5267	9e-22	3135 - 3189	100	55 / 55	minus	ABC10314
MLOC	MLOC_55820.2	5331	9e-22	2801 - 2855	100	55 / 55	minus	ABC10314
JLOC1	JLOC1_36044.2	2463	5e-22	1399 - 1453	100	55 / 55	minus
JLOC1	JLOC1_36044.1	2580	5e-22	1516 - 1570	100	55 / 55	minus
Harvest35	U35_6260	546	3e-25	473 - 532	100	60 / 60	plus

Contig Sequence (546 bp)

>U35_6260 546 Hv_44K_v2
TCGCCGGAGCTGCTCGCCGGCGGCGTCAGCACCCGCACCCGAACCTTCCTCGGCCGGCCG
TGGGGCGCGTACGCGCGGGCCGTGGTCATCGGGTCCTACCTGGGCCCGCTCGTGGACCGC
GACGGGTGGACGGGCTGGCCCGGCGCGGAGCCGGGCCGCGCAGACACGGTCTACTTCGGG
GAGTACGGGAACGAGGGGCCCGGCGCCGGCACGGACGGGCGCGTGGGCTGGGCCGGGTTC
CACGAGATGGGCTACGACGAGGCCGCCCAGTTCGCCGTCGACAAGTTCATTTACGGCGAC
GACTGGCTCGCCGCCACCTCCTTCCCCTACGACCAAGGCATCTGAACTACGCGGGGTCTG
CAGAATTCAGAGGCTAATCTTGAGCCGTTACTGCGTTAAATTCCGGTGAGATGTTCAGTA
AGTTCTGTTGAATCCGTCTGTGTCATGAACACATTATCCAACTGAATCAGATGATTTTTG
GATCTGTTAAGACTTAAGCGTGCAATCAATCAGCAGTTTTTACCATTGCAAAAAAAAAAA
AAAAAA

Homology of Contig U35_6260 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g09340.1	586	3e-58	protein\|pectinesterase, putative, expressed
Brachypodium v1_2	Bradi1g46720.1	153	3e-57
Arabidopsis v10	None