- Probe CUST_30399_PI390587928
- Source Contig U35_19675
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_30399_PI390587928 | Hv_44K_v2 | AAATCGGCGTCCCCAATGGCTTCTTCCAAGGATATGGACAGGCGCAGCTGAATGTGTACA | 690 | GeneList: darkturquoise MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.072 | 0.255 | 1.762 | 1.890 | 0.950 | 1.248 |
Raw | 6.627 | 40.249 | 242.302 | 411.574 | 70.410 | 102.381 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK362201 | 1719 | 2e-24 | 953 - 1012 | 100 | 60 / 60 | plus | ABC11736 |
MLOC | MLOC_80073.2 | 1875 | 2e-24 | 752 - 811 | 100 | 60 / 60 | minus | ABC11736 |
MLOC | MLOC_80073.1 | 1849 | 2e-24 | 666 - 725 | 100 | 60 / 60 | minus | ABC11736 |
JLOC1 | JLOC1_53327.2 | 2119 | 8e-25 | 1046 - 1105 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_53327.1 | 1903 | 8e-25 | 1032 - 1091 | 100 | 60 / 60 | plus | |
Harvest21 | ABC11736 | 981 | 3e-25 | 287 - 346 | 100 | 60 / 60 | plus | ABC11736 |
Harvest21 | ABC11735 | 750 | 3e-25 | 691 - 750 | 100 | 60 / 60 | plus | |
Harvest21 | ABC11734 | 565 | 3e-25 | 292 - 351 | 100 | 60 / 60 | plus | |
Harvest35 | U35_19675 | 750 | 3e-25 | 691 - 750 | 100 | 60 / 60 | plus | |
Harvest35 | U35_19674 | 986 | 3e-25 | 292 - 351 | 100 | 60 / 60 | plus |
Contig Sequence (750 bp)
>U35_19675 750 Hv_44K_v2 GCTGCGACTGAAACTGTCGCCGCCGTCCTCGCTCTGCTTGCTGTCGCCGCCGGCGTCNCG CACGGCTTCGAGTTCCACGAGGCCACCGTGGACGCCATCCAGCTCGGCTTCAGCAACGGG ACTCTAACCTCCANGGCGCTCGGGGGGGTGGGGCTGNACCANATCGGCCGGCTCAACCCG CTCCTGCACACCATCATCGAGGTGAACCCGGACGCGCTCCGGCAGGCCAAGCGCGCCGAC GCCGAGCTTCGCTCCTCCGGCCATGCCACCGGCTCGCTGCACGGCGTCCCCGTCCTGCTC AAGGACAACATCGCCACCCGCGACGCGCTCAACACGACGGCCGGCTCCTTGGCCCTCCTA GGCTCCGTGGTGAGGCGCGACGCCGGCGTGGTGGCCCGGCTCCGGCGTGCGGGCGCCGTG GTGCTCGGGAAGGCCAGCCTGTCCGAGTGGGCCAATTTCCGGCAAGTGGACGCCGGGTGG AGCGCCCGCGGCGGCCAGGCACGGAACCCGTACGTGCTGTCGTCCACCCCGTGCGGGTCG AGCGCCGGACGGTGTCGGACGCGGTGCACGTGTTGGACGCCATCGTCGGCTACGACGAGC ACGACGCCGCGGCCACCGGAGCGGCATCCAAGTACATCCCGCGCGGCGGGTACACGCAGT TCCTGAAGAAAGATGGGCTCAAGGGGAAGAAAATCGGCGTCCCCAATGGCTTCTTCCAAG GATATGGACAGGCGCAGCTGAATGTGTACA
Homology of Contig U35_19675 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | LOC_Os04g10460.1 | 504 | 1e-56 | protein|amidase, putative, expressed |
Brachypodium v1_2 | Bradi5g00890.1 | 448 | 6e-57 | |
Arabidopsis v10 | None |