barSeed - Barley Seed Development Database

Probe CUST_30391_PI390587928

Source Contig U35_45945

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30391_PI390587928	Hv_44K_v2	CGCTGGACTTGAGCCACTTGTTTCACAATTTACGGCTTCATACGGGATGGTTTTGAATCT	317	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56552.1	6869	2e-24	5158 - 5217	100	60 / 60	minus	ABC20728 ABC47683
MLOC	MLOC_56552.3	4982	2e-24	3371 - 3430	100	60 / 60	minus	ABC20728 ABC47683
MLOC	MLOC_56552.2	7106	2e-24	5158 - 5217	100	60 / 60	minus	ABC20728 ABC47683
JLOC1	JLOC1_36585.3	7094	8e-25	1878 - 1937	100	60 / 60	plus
JLOC1	JLOC1_36585.2	7055	8e-25	1839 - 1898	100	60 / 60	plus
JLOC1	JLOC1_36585.1	6978	8e-25	1762 - 1821	100	60 / 60	plus
Harvest21	ABC45390	377	3e-25	318 - 377	100	60 / 60	plus
Harvest35	U35_45945	377	3e-25	318 - 377	100	60 / 60	plus

Contig Sequence (377 bp)

>U35_45945 377 Hv_44K_v2
CTCTTGCGAGGAGTTGCTGCCCATCATGCTGGTTGCTTGCCACTGTGGAAGTCTTTCATT
GAAGAACTGTTTCAGCGTGGCCTTGTTAAAGTAGTCTTTGCAACAGAAACCCTTGCTGCT
GGGATCAACATGCCTGCTAGGACAGCTGTGATTTCTTCTCTCAGCAAAAGAATTGATGCC
GGGCGCCAGCTCTTAACCCCAAATAACCTATTCCAGATGGCAAGTCGTGCTGGAAGGAGA
GGGATCGACACAGTTGGGCATACTGTTCTTGTTCAGACTACTAATGAAGGGCCTGAAGAA
TGTTGTGATGTTATCTTCGCTGGACTTGAGCCACTTGTTTCACAATTTACGGCTTCATAC
GGGATGGTTTTGAATCT

Homology of Contig U35_45945 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g50560.2	1070	5e-74	protein\|DSHCT domain containing protein, expressed
Brachypodium v1_2	Bradi3g59790.1	1180	3e-75
Arabidopsis v10	AT1G70070.1	1171	1e-60	\| Symbols: EMB25, PDE317, ISE2 \| DEAD/DEAH box helicase, putative \| chr1:26390016-26394148 REVERSE LENGTH=1171