barSeed - Barley Seed Development Database

Probe CUST_30388_PI390587928

Source Contig U35_45949

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30388_PI390587928	Hv_44K_v2	ATTTCAAGTACCTGAAGAGCACGATACAGAACCAGCTGCGCAACACGAGCAAGGCGGCCG	231	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3638.3	2350	2e-24	1058 - 1117	100	60 / 60	plus	None
MLOC	MLOC_3638.2	2207	2e-24	1266 - 1325	100	60 / 60	minus	None
JLOC1	JLOC1_2185.1	2237	8e-25	878 - 937	100	60 / 60	plus
Harvest21	ABC45394	434	3e-25	232 - 291	100	60 / 60	plus
Harvest35	U35_45949	434	3e-25	232 - 291	100	60 / 60	plus

Contig Sequence (434 bp)

>U35_45949 434 Hv_44K_v2
GCGGCCACGAGATGGACAGCAGCGACCGCGCTGCCGCTGAGGGCGGCACCGTCTCCGGCG
CCGAGCAGCAGTGGAGGAAGACCAGGCTCATCTCCCTCATGGAAGAAGTTTGCAAGCGAT
ACAGGCAATACTACCAGCAGCTCCAAGCGGGGAGCACCTCGTTCGAGACGGTTGCCGGAC
TGAGCAACGCCGCCCCCTTCGCCTCCATCGCTCTCCGGACGATGTCCAAGCATTTCAAGT
ACCTGAAGAGCACGATACAGAACCAGCTGCGCAACACGAGCAAGGCGGCCGCCGGGAAAG
ACAGCCTCGGCAAGGAAGATATGGCCTTCGGGCTCATGGGCGGCGGCGCCGCCCTCATGA
GGGGAGGCAACGCCAACGCTTTCAGCCAGCCTCACAACATCTGGCGGCCACAGAGGGGAC
TTCCAGAGCGCGCG

Homology of Contig U35_45949 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g38120.1	581	1e-60	protein\|homeodomain protein, putative, expressed
Brachypodium v1_2	Bradi2g23530.1	563	7e-59
Arabidopsis v10	None