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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_30378_PI390587928Hv_44K_v2GTCTGTGTTAGTGTGATGTATTAACTGGCGAATTAATTGGCCGGGAGCCAAGAGGACAAA956GeneList: turquoise
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.5331.6081.1580.7710.2970.317
Raw 883.5561468.176917.707966.598130.432151.657



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_61639.116016e-24169 - 22710059 / 59minus ABC17391
JLOC1JLOC1_40281.115253e-241389 - 144710059 / 59plus
Harvest21ABC1739110303e-2515 - 7410060 / 60minusABC17391
Harvest35U35_2199910303e-25957 - 101610060 / 60plus



Contig Sequence (1030 bp)

>U35_21999 1030 Hv_44K_v2
AGGCATTGTACCCGAGCAAACCAACAGGTATGCCAGCCGTAAGCAGCAGACCGGAGGTGA
CAACCAAGTTAGACCACCGCAGCAGGACCCGAGAAGAGGTGAACATGAAGGCCGCTATCA
AAGGCCTCCTTTGGAACAGCCTAGTCCGTCGCCGCCAAGGTTCAACCAAGGAAGACCCCC
ACAGCAAGACCCGAGAAGAAACGAGAACGAAGACAGGTACCGGTTCAAGGACAACCAAAG
GCCACCTCTGCAACAGCCTGGCCCGCCGCCCCCAAGGTTCAACCAAGGCAGCAGACCCCC
ACCGCAGGACCCGAGGGGAAACGAGAGAGGAACCCGTGTCCCACCGTATAACAGCCAGCA
GCCCCAGTTCCAGCAATCGAATCCGAATGCCGAGCCATCAGCAGGGAACCCTGCCTCGAC
AGCAGCCAGGAGTGTGGGCGTATTCAGCAGCCGGAAGCCAGCCACGGCATCGGAGCCGAA
GAAGACGGTGGACGGTAAGCCTGCCGATACGACCGGACCGGCGAAAAGCTTTGGAATATT
CAGTAAGCCTAAAAAGGGATGATGAAAAGCTCGTGAGAATGAATGAGGTGGGCGGTGATG
CTTGCGAAGAATGATACTAGGTTTTTTCGCGGTGGCCGTCTATTTGAGAATGTTTGCATT
GAGATTGCCGGTACTTACACTCGGTCTTTTACGCATGATGAAGCTGGCGGTGCCATGTAA
TCTTTGAGGTCAGGAGCACTGATCTGCTTGTCTATCATCAACTAGTAGCACGGTAACACC
ATTTTGTTTTTATCATTTATTTGGCCTACATAAATAATCAGTGAGCCTCATTATTGGATG
AACCAATGCAGTGTCTGGTGTGTGTCACAGCTATTTTTGACCCATCTACCAATACTTGTT
GAAACTGTCTGTGTTAGTGTGATGTATTAACTGGTCTACCAATACTTGTTGAAACTGTCT
GTGTTAGTGTGATGTATTAACTGGCGAATTAATTGGCCGGGAGCCAAGAGGACAAAAAAA
AAAAAAAAAA



Homology of Contig U35_21999 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None