barSeed - Barley Seed Development Database

Probe CUST_30370_PI390587928

Source Contig U35_19684

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30370_PI390587928	Hv_44K_v2	CTGTAGTGCTAGCGACGAAAGGATCAAATGGAATGAATGAAAGTTAACCTGCGCAAAAAA	941	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.189	5.775	1.349	0.640	0.873	0.777
Raw	49.083	73.834	14.448	10.946	2.999	2.815

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370198	994	9e-22	931 - 985	100	55 / 55	plus	None
MLOC	MLOC_34457.1	890	9e-22	760 - 814	100	55 / 55	plus	None
JLOC1	JLOC1_22220.1	835	5e-22	759 - 813	100	55 / 55	plus
Harvest35	U35_19684	1012	3e-25	942 - 1001	100	60 / 60	plus

Contig Sequence (1012 bp)

>U35_19684 1012 Hv_44K_v2
GGCTGCAGGAGCAACCCCACCACCGCAGGGCGTACGCACGCACGCACGCACGCCGTCGAG
GTCCACCATGACCATGCTCGCTTCCCTCTTCTCCCCTTCCCCTATCCTCACCACCGCCGC
CTCCACCTCCTCCTCTGCCACCTCGCAGCCAGCGCCGCAGACCGTGAGGCTCCCGGCTCC
CAGGCCGCTCACCGCCACGCTGGCCGCGGCAGCCGCGGCCGGCCTCCTCCTGCTGACCCC
CGCGGCGCCGTTGCACGCGGAGGCGGAGTTCAAGGTGTACTACGGCACGGCGGCGAGCGC
GGCCAACTACGGCGGGTACGGGGGCAACGCGAACAAGAGGGACGCGGCGGAGTACGTGTA
CGACGTGCCCGAGGGGTGGAAGGAGCGGCTGGTGTCCAAGGTGGAGAAGGGCACCAACGG
CACGGACAGCGAGTTCTTCAACCCGCGCAAGCGCTCCGAGCGGGAGTACCTCACCTTCCT
CTCCGGGTTCCGCAAGCTGGCCCCCGTCGGCGCCGTGCTCGACAACCTCGCCCTCTCCGA
CGTCGGGCTGCAGGACCAGATCTCGTCGGCGGACGACGTGACGTCGGCGGAGCGGAAGGA
CGCGGACGGGCAGGTGTACTACGAGTACGAGGTGGCCGGCGCCGGCGCGCACAGCCTCAT
CTCCGTCACGTGCGCCCGGAACAAGCTGTACGCGCACTTCGTCACGGCGCCCAACCCCGA
GTGGGGGCGCGACGAGGCCGTCCTACGCCGCCTGCACCAGTCATTCAAGACTGTCGACTT
CAGCGGCCAAGATTAACATGCAGGTGTTGTAAATTAATTAAGCGGTTTTGTATAGGCGCT
ATCATCGAGCAAGAGGTAATCGATCTGGATAATCGGCATACAGTATCATCATCTGTAAAT
TGATTTCTTCCGCTGTGCAACACCAGCAGTGCTGCTGTAGACTGTAGTGCTAGCGACGAA
AGGATCAAATGGAATGAATGAAAGTTAACCTGCGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_19684 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g39430.1	244	3e-91	protein\|thylakoid lumenal 19 kDa protein, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi3g39830.1	249	3e-92
Arabidopsis v10	AT3G63540.1	143	3e-64	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein \| chr3:23459372-23459803 REVERSE LENGTH=143