barSeed - Barley Seed Development Database

Probe CUST_30367_PI390587928

Source Contig U35_19687

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30367_PI390587928	Hv_44K_v2	TGGCTAAATGTTGCAGTTCAACATCTTATCACATTGTCTTGCATTGCATATCGATTGCAC	826	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376742	3762	2e-24	869 - 928	100	60 / 60	plus	ABC12168 ABC39883
JLOC1	JLOC1_9794.1	1005	8e-25	894 - 953	100	60 / 60	plus
Harvest21	ABC12168	910	3e-25	827 - 886	100	60 / 60	plus	ABC12168
Harvest35	U35_19687	910	3e-25	827 - 886	100	60 / 60	plus

Contig Sequence (910 bp)

>U35_19687 910 Hv_44K_v2
CACGGGAGCCCTCTTGCTCTCAGACTCCTAGCTCTAGCTCTCTCTTCGCCTCCGTGCAAA
TGGGCTCCTCGCCTGCGTCTTCGCCTTCGCCTTCGCCTTCGCCGCCGATGCCCATGATAG
GGAGGGCCGGCAACCTCACCGTCTTCATCACGCCGCCGTCGCCGGCCAGCAACCCGCGCT
CCTCGCGCCCGTCCGGCTCCCCAACGCCGGACTTCTCCACCCCTACCTCCCGCACGGGCA
CGGCACCGCCTCCGCTGCAGGAGAGCGCTAGCCCGCCCGCGCCGCCGGTCAAGTTCTCGC
CCCCCGCACCGCCCGTGAAGGTGTCCCCGCCTCCTGTGCAGGTGCCCCCGCCGCAGTACG
GCAAGGCTTCTGCGGGGGGCAAGCACGACGGATCGGCGTTCGGCTTCTTATGGGACGCCG
TCGCGCGCGTGCAGGAAGCGCACGCGAGCCTGGACGAGTACGTCGCCAACTGGTTCGGAT
TGGATCAGTCTAAGTACCAGTGGGCTCTCAACGACTACTACGACACCACCGGCAAGGAAG
TGGAATATGGCAAAGCTGGGAAGCCAAAGGAGCTTACTACTACTACTAAAGTGCAGAAAG
TTTAGAAGCAACTTCGTTCCAGGTTGTATGTGTAGTGAAGTGAAGTTCTATTTGTTAGAT
CTTGTCATTGGGGCTTCAAGAGTTTTTGCCTCTTTACCTGCCTGATGAAGTACGATCTAC
ATTTGACACAAGGGGCACTTGGATCATAGAGAGTCTGATGTTGTTGTTTTTTGTTGGCTC
CTTTCAGGGTCTGCTGTAATCTGAGACGCAAATTGCGTATTTGCAGTGGCTAAATGTTGC
AGTTCAACATCTTATCACATTGTCTTGCATTGCATATCGATTGCACGGCNTANAAAAAAA
AAAAAAAAAA

Homology of Contig U35_19687 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None